Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211734g00003 ATGGCGATGGTTTCTTCTCTCTCTGCGGCACCAGTTGCTCCTCTTTCCCTCTCTACCTCTTCTTCCACGCTCTCTTCCAATGCAAAATTTGCGTCTCTGTGCTTTCATTCTGGTAACACCTGCAAGCTCAGAACCCCTAAGCTGCTTCACTCATCAACTAGGGTTTATGCTGCGCCTGAAGTTTTGGAATCCGAGGAACCGCTAGACCTACCTTCGGAAACCCTAGGTGATGATGAATCTGACGCCACCACCTTTCAGGTTGGAGACTCGGACACTCGTACCACTTCCTCAATTAGCATTGGTGCAGATCCAGATGCGATGGCACCTAAGCAGAAAATTAGAATCAAACTTAGGTCTTACTGGGTGCCCTTGATAGAGGATTCTTGCAAGCAGATACTAGATGCAGCAAGGAATACCAATGCAAAAACCATGGGTCCAGTACCATTGCCAACTAAGAAGAGAATTTATTGTGTTCTTAAATCGCCACATGTACATAAGGATGCTCGATTCCATTTTGAGATCAGAACACATCAGCGTCTCATTGATATTCTGTATCCCACAGCGCAAACAATAGATTCTCTGATGCAGCTTGATCTTCCTGCTGGTGTGGATGTAGAGGTCAAGCTCTGA 630 0.4619 MAMVSSLSAAPVAPLSLSTSSSTLSSNAKFASLCFHSGNTCKLRTPKLLHSSTRVYAAPEVLESEEPLDLPSETLGDDESDATTFQVGDSDTRTTSSISIGADPDAMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211734g00003 209 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 32 209 IPR001848 GO:0003735|GO:0005840|GO:0006412
Stsc211734g00003 209 Hamap 30S ribosomal protein S10 [rpsJ]. 110 209 IPR001848 GO:0003735|GO:0005840|GO:0006412
Stsc211734g00003 209 MobiDBLite consensus disorder prediction 60 103 - -
Stsc211734g00003 209 SUPERFAMILY Ribosomal protein S10 112 209 IPR036838 -
Stsc211734g00003 209 SMART Ribosomal_S10_2 114 208 IPR027486 -
Stsc211734g00003 209 ProSitePatterns Ribosomal protein S10 signature. 136 151 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Stsc211734g00003 209 PRINTS Ribosomal protein S10 family signature 147 162 IPR001848 GO:0003735|GO:0005840|GO:0006412
Stsc211734g00003 209 PRINTS Ribosomal protein S10 family signature 112 125 IPR001848 GO:0003735|GO:0005840|GO:0006412
Stsc211734g00003 209 PRINTS Ribosomal protein S10 family signature 168 182 IPR001848 GO:0003735|GO:0005840|GO:0006412
Stsc211734g00003 209 MobiDBLite consensus disorder prediction 77 101 - -
Stsc211734g00003 209 Gene3D Ribosomal protein S10 domain 102 209 IPR036838 -
Stsc211734g00003 209 Pfam Ribosomal protein S10p/S20e 114 208 IPR027486 -
Stsc211734g00003 209 FunFam 30S ribosomal protein S10 107 209 - -
Stsc211734g00003 209 NCBIfam 30S ribosomal protein S10 111 208 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211734g00003 Stsc-Chr211734 6123 8253 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211734g00003 111 209 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 31.000 7.97e-09 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211734g00003 K02946 - gmx:100526953 287.73