Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211731g00003 ATGGGGGATAAGCTGCCGGAAGAAGAGAGAATCACCGATAGCAGCGATTTCACGTCGGAGGATGAGGGAACGGAGGACTACCGGCGCGGCGGCTACCACGCCGTCAGAATCGGAGACACCTTCAAGAATAGCCGCTATGTCGTTCAGAGCAAGCTTGGTTGGGGCCACTTCTCCACTGTTTGGCTCGCTTGGGACACTCAACACTCTAGGTATGTAGCTCTGAAGGTTCAGAAGAGTGCTCAGCATTACACTGAGGCTGCAATGGATGAGATAACAATTTTGCAACAGGTTGCGGAGGGTGACCCGGAGGATAAGAAATGTGTGGTGAAGCTTTTGGACCATTTCAAGCATTCTGGTCCGAATGGACAGCATGTCTGCATGGTGTTTGAATACCTTGGTGATAATCTATTAACTCTTATAAAGTATTCAGATTATCGTGGGATGCCTATTAGTAGAGTTAAAGAGATATGCTTTCATATTTTGGTTGGATTGGATTACTTACACAAGCAGCTTTCTATTATACATACGGACTTGAAACCCGAAAACATCCTTCTTTTATCAGTGATTGATCCATCTAAGGATCCTAGAAAGTCTGGCACTCCTCTCATTCTTCCGAATAGTAAAGATAAGACAGTGTTAGAGTCTGGAGGTGCAAAAGACCTGAAAACATCAAATGGGGATTTGCTCAAGAATCATAAGAAAAAAATTAAAAGAAAAGCTAAGCAAGCAGCACATGGATGTGTGGAGAAGGAAGCTTCAGAAGGAGTTGATGGTAATCCTGAAACCAGTGGTGCCGTAGAATCATCTCCAAATGCAAGCTCTGCGATAGAACAAGCTTCAAGTTCTGCAGGCACCCATCGGTTATCAGATGCTGATGGAACAAGGTCAAAAGAACAGAGTGGTAAAAGAGGAAGCCATTCAATGAGACAAAAGCTGCTGGCATCAGCTGATCTGAATTGCAAGTTAGTTGACTTTGGTAATGCTTGCTGGACATATAAACAGTTTACAAATGATATCCAGACAAGACAATATCGGTGCCCAGAGGTGATCCTTGGGTCAAAGTATTCTACTTCTGCAGATCTTTGGTCCTTTGCTTGCATTTGTTTTGAGCTTGCCACAGGAGATGTTCTATTTGATCCTCACAGCGGTGACAACTTCGATCGGGATGAGGACCACTTGGCATTAATGATGGAACTTTTGGGAATGATGCCGCGGAAGATTGCACTAGGAGGCCGTTATTCTCGCGATTTCTTCAATAGATATGGGGATCTAAGGCATATCAGGCGATTACGATTTTGGCCTTTGAACAAGGTTCTGATGGAGAAGTATGACTTCAGCGAGCGAGAAGCAAATGAAATGACTGAGTTTCTGGTTCCAATTCTTGACTTTGTTCCCGAGAAACGGCCAACTGCCGGGCAGTGCCTTCAACATCCTTGGATCAATGCCGGCCCACTGCTTTTGGAGCCATCCATCTCCTCTTCTAATCAGAACCCGCCTGTAGCCGAGGCTGGCATTTCTGACCAAAAGAAAAAGGACAAAGATGAAAGGGAGGCCATGGAGGCAGGAATGGGAAACATAGCAATCAACACAGATACCAAAACACTCATGGCTTCCCCATCTAAGAAACTCTTCCAAGGAAGCCATAGCCACAAGTAG 1656 0.4511 MGDKLPEEERITDSSDFTSEDEGTEDYRRGGYHAVRIGDTFKNSRYVVQSKLGWGHFSTVWLAWDTQHSRYVALKVQKSAQHYTEAAMDEITILQQVAEGDPEDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGMPISRVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSVIDPSKDPRKSGTPLILPNSKDKTVLESGGAKDLKTSNGDLLKNHKKKIKRKAKQAAHGCVEKEASEGVDGNPETSGAVESSPNASSAIEQASSSAGTHRLSDADGTRSKEQSGKRGSHSMRQKLLASADLNCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEREANEMTEFLVPILDFVPEKRPTAGQCLQHPWINAGPLLLEPSISSSNQNPPVAEAGISDQKKKDKDEREAMEAGMGNIAINTDTKTLMASPSKKLFQGSHSHK 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211731g00003 551 CDD STKc_SRPK 35 480 - -
Stsc211731g00003 551 SMART serkin_6 46 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211731g00003 551 ProSiteProfiles Protein kinase domain profile. 46 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211731g00003 551 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 13 511 - -
Stsc211731g00003 551 MobiDBLite consensus disorder prediction 194 308 - -
Stsc211731g00003 551 MobiDBLite consensus disorder prediction 242 256 - -
Stsc211731g00003 551 Gene3D Transferase(Phosphotransferase) domain 1 129 481 - -
Stsc211731g00003 551 MobiDBLite consensus disorder prediction 1 26 - -
Stsc211731g00003 551 Pfam Protein kinase domain 46 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211731g00003 551 Pfam Protein kinase domain 312 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211731g00003 551 SUPERFAMILY Protein kinase-like (PK-like) 41 492 IPR011009 -
Stsc211731g00003 551 FunFam CMGC/SRPK protein kinase 32 131 - -
Stsc211731g00003 551 MobiDBLite consensus disorder prediction 290 305 - -
Stsc211731g00003 551 Gene3D Phosphorylase Kinase; domain 1 22 128 - -
Stsc211731g00003 551 ProSitePatterns Protein kinases ATP-binding region signature. 52 75 IPR017441 GO:0005524
Stsc211731g00003 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Stsc211731g00003 551 MobiDBLite consensus disorder prediction 490 532 - -
Stsc211731g00003 551 MobiDBLite consensus disorder prediction 505 520 - -
Stsc211731g00003 551 MobiDBLite consensus disorder prediction 262 289 - -
Stsc211731g00003 551 FunFam Serine/threonine-protein kinase SRPK-like protein 310 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211731g00003 Stsc-Chr211731 10933 15201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211731g00003 10 529 EF-hand Containing Proteins AT5G22840 70.802 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Stsc211731g00003 Pkinase 4.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211731g00003 K08832 - gmx:100803070 952.584