Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211731g00001 ATGTTGGAGGCTACTCCTTCATCATCATCAATGGAGAAAATGAACCATGGCGGATCATCATCATCCAACTTGGAGAAGAAAAAGAGGCTAACGAACGAGCAGCTCGACTCGCTGGAGAGGAGCTTCCAGAAAGAAATAAAGTTGGATCCTGATCGGAAGATGAAGCTATCAAAGGAGTTAGGGCTTCAACCTCGGCAAATTGCTGTGTGGTTCCAAAATAGGCGTGCAAGGTGGAAGGCAAAGCAACTTGAGCATTTGTATGATTCACTCAAACAAGAGTATGATGTTATCTCCAAGGAGAAACAAAAGCTTCAAGAAGAGGTAATGAAATTGAAGGGTATACTGAGAGATCAACAAGGTTGTGGTAGAACAACTCAGATATCAAATTACACTAATACTGAAATCTCTGGTGGTGGAGGTGGTGGTGATGAGACTACTGTAGAAAGCACTTCTGAGGCCCTACGCTGCTCCAACAAGAAATCATCATCAATTTCAAGAGCTGCTTCCATTGTTCATCATCATAATCATAACAATAATGTCACAGATAATAATGGAAACTGCTCTTTCACTGTTGATGACTACAACTCTACAGTTCCAGTTCCAGTTCCTGTTCTTCCCTATTGGCCTGCTGTTCCTAATTATTACCCTTAA 651 0.4163 MLEATPSSSSMEKMNHGGSSSSNLEKKKRLTNEQLDSLERSFQKEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKAKQLEHLYDSLKQEYDVISKEKQKLQEEVMKLKGILRDQQGCGRTTQISNYTNTEISGGGGGGDETTVESTSEALRCSNKKSSSISRAASIVHHHNHNNNVTDNNGNCSFTVDDYNSTVPVPVPVLPYWPAVPNYYP 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211731g00001 216 Pfam Homeobox associated leucine zipper 81 115 IPR003106 GO:0006355|GO:0043565
Stsc211731g00001 216 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Stsc211731g00001 216 Coils Coil 21 41 - -
Stsc211731g00001 216 Gene3D - 17 87 - -
Stsc211731g00001 216 PRINTS Lambda-repressor HTH signature 52 61 IPR000047 GO:0003677
Stsc211731g00001 216 PRINTS Lambda-repressor HTH signature 61 77 IPR000047 GO:0003677
Stsc211731g00001 216 MobiDBLite consensus disorder prediction 22 36 - -
Stsc211731g00001 216 CDD homeodomain 26 82 IPR001356 GO:0003677
Stsc211731g00001 216 MobiDBLite consensus disorder prediction 1 21 - -
Stsc211731g00001 216 Pfam Homeodomain 26 79 IPR001356 GO:0003677
Stsc211731g00001 216 SUPERFAMILY Homeodomain-like 7 83 IPR009057 -
Stsc211731g00001 216 MobiDBLite consensus disorder prediction 1 36 - -
Stsc211731g00001 216 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 17 174 IPR045224 GO:0003700
Stsc211731g00001 216 Coils Coil 73 114 - -
Stsc211731g00001 216 FunFam Putative homeobox-leucine zipper protein ATHB-51 23 86 - -
Stsc211731g00001 216 SMART HOX_1 23 85 IPR001356 GO:0003677
Stsc211731g00001 216 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211731g00001 Stsc-Chr211731 3914 5123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211731g00001 26 123 Homeobox Transcription Factor Family AT2G36610 65.094 1.59e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc211731g00001 Homeodomain 4.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211731g00001 - - gmx:100778007 237.269