Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211729g00006 ATGAAAGAAGCAGCTTATGAACAATCACCTACACTTTTCTTGTCAGATTTTCAACAGGTCTGGAGAAAGCTTGAAGACACTGGAAATGAGATTGTTGCTATAGCAAAGAGTCTTTCCAACATGTCCAGAACATATTACCGTGAGCATTTGGGTAACCATGCATTGGACACTGTTATGAGGCAACAGCAGGCAGAAGTTTGTAATNNNNNNNNNNCCTGCAATTGCAGGCAATGTGGAGGCAAGGCAGATGGGACAGACTCCTTGATTTGTGATTCATGTGAGGAGTTGTATCATTTATCTTGTATCGTGCCGGCTCTGAAGAAATTACCTGAAAAAAGCTGGTTCTGTGCCAACTGTGCTGCTATTGGAATAAGATCTCCACATGACAATTGTGTGGTGTGTGAAAGGTTGAACGCTCCAAACTCCTTGAACAACATTATTGGTGAGGAGAGCATCCCTACAAATGATGAAACACACAATGAATTGGAGGAAAATTCAAATTGTACATATGATGGGATCCAGGGGTCCGTAGGTAAAAGAAATTTGCCTGATTGCAAAATTTGTAGGGAGGGAGTAGATGGGGAAAAAGTACGGATATGCAGTCACAATGCATGCCCTAGTAAACACTACCATGTAAGGTGTTTGTCCCCTGAGCAGGTCAAGAAATATGGTCCCTGTTGGTACTGCCCTTCTTGTTTATGTCAAGGTTGCCACACTGATCGAGATGATCACATGATTGTTCTCTGTGATGGTTGCGACCATGGATACCACCTCGATTGCATGGAGCCTAAACGGACTACCATTCCAAAAGGCAAATGGTTCTGCAGAAAATGTGATGCAGAGATCCAAGCAACATTCCGGGCGAAAAAGGCATATGAGAGTCTAAATTTTAGAAGTGGCGAAAATGTTTCAAAACCCAAGTATAAGCTTGGTAAGAAATGGAAACGAGGGCGAGAATTGGAGAAAGATGGCGGAATGGACATGCTTTTAACAGCAGCCAACACACTTAAATTTGAAGAGAACTTAGCTAGTAGCTAG 1038 0.422 MKEAAYEQSPTLFLSDFQQVWRKLEDTGNEIVAIAKSLSNMSRTYYREHLGNHALDTVMRQQQAEVCNXXXXCNCRQCGGKADGTDSLICDSCEELYHLSCIVPALKKLPEKSWFCANCAAIGIRSPHDNCVVCERLNAPNSLNNIIGEESIPTNDETHNELEENSNCTYDGIQGSVGKRNLPDCKICREGVDGEKVRICSHNACPSKHYHVRCLSPEQVKKYGPCWYCPSCLCQGCHTDRDDHMIVLCDGCDHGYHLDCMEPKRTTIPKGKWFCRKCDAEIQATFRAKKAYESLNFRSGENVSKPKYKLGKKWKRGRELEKDGGMDMLLTAANTLKFEENLASS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211729g00006 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 241 IPR013083 -
Stsc211729g00006 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 309 IPR013083 -
Stsc211729g00006 345 SUPERFAMILY FYVE/PHD zinc finger 180 233 IPR011011 -
Stsc211729g00006 345 SUPERFAMILY FYVE/PHD zinc finger 53 120 IPR011011 -
Stsc211729g00006 345 SUPERFAMILY FYVE/PHD zinc finger 233 283 IPR011011 -
Stsc211729g00006 345 ProSiteProfiles Zinc finger PHD-type profile. 72 122 IPR019787 -
Stsc211729g00006 345 PANTHER OS02G0192300 PROTEIN 207 292 - -
Stsc211729g00006 345 Pfam PHD-finger 75 120 IPR019787 -
Stsc211729g00006 345 Pfam PHD-finger 234 280 IPR019787 -
Stsc211729g00006 345 ProSiteProfiles Zinc finger PHD-type profile. 231 281 IPR019787 -
Stsc211729g00006 345 ProSitePatterns Zinc finger PHD-type signature. 73 119 IPR019786 -
Stsc211729g00006 345 SMART PHD_3 184 233 IPR001965 -
Stsc211729g00006 345 SMART PHD_3 236 279 IPR001965 -
Stsc211729g00006 345 SMART PHD_3 72 120 IPR001965 -
Stsc211729g00006 345 Gene3D - 5 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211729g00006 Stsc-Chr211729 24568 30815 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211729g00006 233 300 C2H2 Transcription Factor Family AT3G01460 35.294 4.82e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc211729g00006 PHD 2.8e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211729g00006 - - aip:107609089 610.912