LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc211727g00004	ATGAGAGGAGATGGTGGACTCTCCATGGATTCCGATCCCATTGCGAGGTTCTTCCTTCGCACTAGTAATAATAATAACCCCGTTGTTCTCAACTCTTTTCCCGATGATAACACCACCACTACCTCCGCCTCGTTACAACAAGTCAACCTTAGCTCTTGTTCTTCCAACCATAACAACTTCATCAATCATGATCATCATCATCACAACAACACGAGACAAGAGTTAGACTTCATCCTCACTCCCAATAACAACAAATACGGTGACAACCTTGTTGCCCGTGAAGACGACGACGACGACAATCATCATCCCTTGGAATTCAAAGTAAACACCGGTTTGAATCTTCTCACTACCAGCACAAGTAGTGATCTTCAACAACTACCAACGGAGGAGGAGGAAGATAACGCGCCACTAATAAATTCGCAAGACAGAAGAAGAACTAAACTTGAGGAGGTGGGTGTAATTGAAGCGGAGATAGAGAGAGTGAAGGTGGAGAATGAGAGGTTAAGGGAGATGATTGATGAGGCAAACACCCATTACAGTGCGCTTCAGATGCACCACGTGAATCTCATGAATGAAAAGAACAAGAACAAGAAGCAATTAATAGGTAATAATAATAGTAGTAAGAGTGATCAAAGAGTATTGGTTCCAAGGCAGTTTATGGATCTTGGGTTAGCAACAAATGCTGATGATGATGATCATGGTTGTGGTGCCGACGGCGGCGAGGACAACAAAGAAGAACCGTCTTCGTCATCACTGCATGATCAAAGATCAAGATCGAGATCACCGTATGGATCCGGGAATTCGAAGAATAGTGGTGATCAAGAGAAGAAGAGGATTGAAAGAGAAGAAAGCCCGATCCAAGAAGAACAAGCTAAGAAAATTCAAAGGTCAAGTAGTCCAACAAAACACAATAATAATAATGTTGACCAACAACAACAAGCTCATGAGGCCACTATGAGGAAAGCTAGAGTTTCTGTTAGAGCTCGATCGGAGGCACCTATGTTAAGTGATGGGTGTCAATGGCGAAAGTATGGACAGAAGATGGCCAAAGGAAACCCATGCCCTCGAGCTTATTATCGTTGCACCATGGCTTCTGGTTGTCCAGTTAGGAAACAGGTACAAAGGTGTGCTGAGGACAGAACAGTGTTAGTGACAACATATGAAGGAAAGCACAACCACCCTTTGCCACCAGCAGCAATGGCCATGGCACAAACCACATCCTCAGCTGCAACAATGCTCCTCTCTGGTTCTTCAATGTCAACCAATGACAACAACAACCTTATCAACAATGCAACAAACTTCTTAGCAACAACTCTTCTCCCGACATCGTCGTCGTCCTCGTCATCACCTACTTCAACCATGGCTACAATCTCAGCTTCAGCACCATTCCCAACTATCACATTGGACCTTACTCATGACGATCACTCCCCCAACAACAACAACAACAACAATCCTTTTCAGTTCCCAATAAGGCCTAGTACAATTCCACAAATACCCTTCCACAATATATTTGGTGCCCATCACCATGATAACAATAACAATAATAATAACCAATCAAAGTTTTGTGGTCTACAAATGCCTAATAGTAATAATAATAATCAAGATCATAGTAATAATAATATTGTTGATACAGTTGGTGCTGCAATTGCATCTGATCCAAACTTCACTGCTGCTTTGGTATCAGCTATTAGTTCCATTATTGGTGCTGCTGCTACTACTCCTCAACAAAACAACAACACTGCTATTGGCAATAACAGCAACAGCAACAGCAACAGCAATGGCAATGGCAATGGCGGCAACAACAATAAGAATAATATATAG	1821	0.4245	MRGDGGLSMDSDPIARFFLRTSNNNNPVVLNSFPDDNTTTTSASLQQVNLSSCSSNHNNFINHDHHHHNNTRQELDFILTPNNNKYGDNLVAREDDDDDNHHPLEFKVNTGLNLLTTSTSSDLQQLPTEEEEDNAPLINSQDRRRTKLEEVGVIEAEIERVKVENERLREMIDEANTHYSALQMHHVNLMNEKNKNKKQLIGNNNSSKSDQRVLVPRQFMDLGLATNADDDDHGCGADGGEDNKEEPSSSSLHDQRSRSRSPYGSGNSKNSGDQEKKRIEREESPIQEEQAKKIQRSSSPTKHNNNNVDQQQQAHEATMRKARVSVRARSEAPMLSDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCAEDRTVLVTTYEGKHNHPLPPAAMAMAQTTSSAATMLLSGSSMSTNDNNNLINNATNFLATTLLPTSSSSSSSPTSTMATISASAPFPTITLDLTHDDHSPNNNNNNNPFQFPIRPSTIPQIPFHNIFGAHHHDNNNNNNNQSKFCGLQMPNSNNNNQDHSNNNIVDTVGAAIASDPNFTAALVSAISSIIGAAATTPQQNNNTAIGNNSNSNSNSNGNGNGGNNNKNNI	606

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc211727g00004	606	MobiDBLite	consensus disorder prediction	254	270	-	-
	Stsc211727g00004	606	MobiDBLite	consensus disorder prediction	225	334	-	-
	Stsc211727g00004	606	MobiDBLite	consensus disorder prediction	577	606	-	-
	Stsc211727g00004	606	MobiDBLite	consensus disorder prediction	291	318	-	-
	Stsc211727g00004	606	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	132	584	IPR044810	GO:0003700
	Stsc211727g00004	606	MobiDBLite	consensus disorder prediction	503	539	-	-
	Stsc211727g00004	606	ProSiteProfiles	WRKY domain profile.	330	396	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Stsc211727g00004	606	MobiDBLite	consensus disorder prediction	226	253	-	-
	Stsc211727g00004	606	Coils	Coil	151	178	-	-
	Stsc211727g00004	606	SMART	WRKY_cls	335	395	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Stsc211727g00004	606	SUPERFAMILY	WRKY DNA-binding domain	328	396	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Stsc211727g00004	606	Gene3D	WRKY domain	320	397	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Stsc211727g00004	606	Pfam	WRKY DNA -binding domain	337	394	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Stsc211727g00004	606	FunFam	probable WRKY transcription factor 31	320	397	-	-
	Stsc211727g00004	606	MobiDBLite	consensus disorder prediction	271	290	-	-
	Stsc211727g00004	606	MobiDBLite	consensus disorder prediction	507	539	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc211727g00004	Stsc-Chr211727	24848	28855	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc211727g00004	91	567	WRKY Transcription Factor Family	AT1G62300	44.773	3.34e-107	332

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Stsc211727g00004		WRKY	5.2e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc211727g00004	-		-	ahf:112737496	602.823