Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211727g00003 ATGGAGTGGAGTAGAGGCCACACTATAGGCCATGGCTCCTCAGCCACCGTCTATATAGCCACCCGCCGTGACGACACCGGCGCCGTATTCGCCGCGAAGTCATCCGAGCTATCAAATTCAGAGTCTTTACAGAGAGAACAGAGGATTTTATCTTCTCTGTGCTCTCCTTATGTGGTTAATTTCAAAGGCTGTGACATAACCCTGGAACACGACAAGCTCTACTACAACCTCTTTATGGAGTACATGCCATTCGGAACCCTATCCACGGCGATTAACCGGCACGGCGGCCGCCTCGACGAGGCGAAGATTAAGACCTACACAAGGCAAATTGTGCAGGGGCTAGAGTACATACACTCTAAAGGGCTGGTACATTGTGACATAAAATGTTCCAACATCTTAATTGGCCCAGAAGGCGCCAAAATTGGTGACTTTGGATGTGCCAAGAGTGCCGCGGACTCGAGAATCGGCGGCACTCCGATGTTCATGGCGCCGGAGGCGGCGAGGGGAGAGGATCAAGGGTGTGCTAGTGATATTTGGTCACTTGGATGCACCATAATTGAAATGGCTAAAGGTGGAACACCGTGGGCTAATTCGTTAGACCCATTTTCTGTTCTTTATCACATTGCATATTCCGGTGAGGTTCCTGAGATTCCATGGTTTCTTTCTGAAGAAGCAAGGGATTTCTTGGGGAAGTGTCTAAGGTGGAATCCACAAGAGAGGTGTACCGCTACTCAGCTTCTTGATCATCCGTTTCTCACTGTCGGAGAATTCGATTCCACGAAGGTGGAATCAAATTCAAGAAGCTCATCATCATCGCCGACAAGTATTCTTGAGCATGGGTTTTGGAGTTGTGTGGAAGAAGGCTCTTCTAGAACTCACACAACAAGAACAACAACAACAACAACAAGAAGCCTTGAGGATTTGCCACGTGGCAGGGTTAGAATGTTGGGTTTGTGTTCAGAGGAACCTTGCTGGGCATCATGTCATGGTGATGATGATGGTGGGAACTGGATCACAATTAGAGGGAATGAGGGTGAGTCATTGGGTGAAGGGGTTTTTGGTAATTTTGGATCAGAGACAGCTTCAATTAGTAATGGTGGTTTGGATCTGAAGTTGGTGGAAAGCAATGTGAGTGGTAGAATTTGCAGTAGTAGTAGTAGTGGGCATTTTTGTCACCATAATAATAGTATCATGTGTATAGATGATAGTGTTGTAGTTAGAAATCTAAATTCTGTGAGGGACATTGATGTTTCAATCTTAGATTTGTTATGA 1272 0.4623 MEWSRGHTIGHGSSATVYIATRRDDTGAVFAAKSSELSNSESLQREQRILSSLCSPYVVNFKGCDITLEHDKLYYNLFMEYMPFGTLSTAINRHGGRLDEAKIKTYTRQIVQGLEYIHSKGLVHCDIKCSNILIGPEGAKIGDFGCAKSAADSRIGGTPMFMAPEAARGEDQGCASDIWSLGCTIIEMAKGGTPWANSLDPFSVLYHIAYSGEVPEIPWFLSEEARDFLGKCLRWNPQERCTATQLLDHPFLTVGEFDSTKVESNSRSSSSSPTSILEHGFWSCVEEGSSRTHTTRTTTTTTRSLEDLPRGRVRMLGLCSEEPCWASCHGDDDGGNWITIRGNEGESLGEGVFGNFGSETASISNGGLDLKLVESNVSGRICSSSSSGHFCHHNNSIMCIDDSVVVRNLNSVRDIDVSILDLL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211727g00003 423 CDD STKc_MAPKKK 2 252 - -
Stsc211727g00003 423 ProSitePatterns Protein kinases ATP-binding region signature. 9 33 IPR017441 GO:0005524
Stsc211727g00003 423 Gene3D Transferase(Phosphotransferase) domain 1 2 308 - -
Stsc211727g00003 423 SMART serkin_6 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211727g00003 423 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 291 - -
Stsc211727g00003 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Stsc211727g00003 423 Pfam Protein kinase domain 5 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211727g00003 423 SUPERFAMILY Protein kinase-like (PK-like) 3 287 IPR011009 -
Stsc211727g00003 423 ProSiteProfiles Protein kinase domain profile. 3 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211727g00003 Stsc-Chr211727 16967 18280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211727g00003 1 343 MAP Kinase Kinase Kinase AT1G05100 48.451 1.34e-101 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc211727g00003 Pkinase 2.7e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211727g00003 K20716 - gmx:100819665 436.417