Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211724g00004 ATGTCATCGGATCCGGATATTAAGACTCAGATCGCGAATCACCCTCGCTATCCAGATTTGCTCTCTGCTTACGTTCAATTTCAAAAGGTTGGAGCGCCTCCAGAAGTGGCGTCTCTGCTTGAAGAAATAAGCCGGCGCGAAAGTCAGCCAATAATTGATACTCCCCGCCATCATCAGATTGGAGATGATCCTGAGCTTGATCATTTCATGGAATCATACTGCGATGTTCTTCATAAATACAAGGAGGAGCTGTCCAAGCCATTCAAGGAAGCAAGCTTGTTTTTGTGTAACATCCAATCACAGCTCACCAATCTTTGTAAGGGAACACTAACAATCTCTCACCACAACAAAGTTAATCATCCATCCGATGAAGCAGGAGGAGGAGGGAGTTATTCAGTGGTGGAAGGAGATGATGAATATGGAAATGGTGGGAGATGGAGATCATATGGAGTTGGAGATAAACAAGTTAAGGAAATGCTGCTTCGTAAGTACAGTGGTTATCTTAGTGAGTTGAGAAAAGAGTTTCTTAAGAAAAGGAAAAAGGGTAAGCTTCCTAAACATGCAAGGATTGCACTCATGAACTGGTGGAATTCCCATTATAGATGGCCTTATCCTACGGAGGAGGAGAAATTGATGCTATCAGAGATGAGTGGACTGGACATAAAGCAGATAAACAATTGGTTCATTAATCAGAGGAAACGCCATTGGAAACCATCTTCAGATATGCGATTTTCTGGCATGGAAGGTGTAACTGGAACTTCCCATGCCACCATCTTAGAACCTATGTAA 789 0.4271 MSSDPDIKTQIANHPRYPDLLSAYVQFQKVGAPPEVASLLEEISRRESQPIIDTPRHHQIGDDPELDHFMESYCDVLHKYKEELSKPFKEASLFLCNIQSQLTNLCKGTLTISHHNKVNHPSDEAGGGGSYSVVEGDDEYGNGGRWRSYGVGDKQVKEMLLRKYSGYLSELRKEFLKKRKKGKLPKHARIALMNWWNSHYRWPYPTEEEKLMLSEMSGLDIKQINNWFINQRKRHWKPSSDMRFSGMEGVTGTSHATILEPM 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211724g00004 262 CDD homeodomain 191 239 IPR001356 GO:0003677
Stsc211724g00004 262 Gene3D - 173 246 - -
Stsc211724g00004 262 SMART ELK_2 155 176 IPR005539 GO:0003677
Stsc211724g00004 262 ProSiteProfiles 'Homeobox' domain profile. 175 238 IPR001356 GO:0003677
Stsc211724g00004 262 SMART KNOX2_2 56 107 IPR005541 GO:0003677|GO:0005634
Stsc211724g00004 262 ProSitePatterns 'Homeobox' domain signature. 213 236 IPR017970 GO:0000981|GO:0006355
Stsc211724g00004 262 ProSiteProfiles ELK domain profile. 155 175 IPR005539 GO:0003677
Stsc211724g00004 262 SMART KNOX1_2 5 49 IPR005540 GO:0003677|GO:0005634
Stsc211724g00004 262 SMART HOX_1 177 242 IPR001356 GO:0003677
Stsc211724g00004 262 Pfam KNOX1 domain 7 45 IPR005540 GO:0003677|GO:0005634
Stsc211724g00004 262 Pfam KNOX2 domain 59 106 IPR005541 GO:0003677|GO:0005634
Stsc211724g00004 262 Pfam Homeobox KN domain 195 234 IPR008422 GO:0003677|GO:0006355
Stsc211724g00004 262 Pfam ELK domain 157 176 IPR005539 GO:0003677
Stsc211724g00004 262 SUPERFAMILY Homeodomain-like 177 247 IPR009057 -
Stsc211724g00004 262 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 30 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211724g00004 Stsc-Chr211724 39623 48008 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211724g00004 7 253 Homeobox Transcription Factor Family AT1G23380 50.794 5.54e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc211724g00004 KNOX2 2.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211724g00004 - - mtr:11406488 311.227