LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc211723g00006	ATGGAAGCCAGATTTGTTGGGAACTCTGAACTGGTTGCACAATTGGTCACAGAAAATGGATTCAAAGCTGCTTATGCCATTAAGGATGGTGCAGAAGGACCTAGAGGATGGACGAACAGTGGTCTTCCATGGAGAGAACCAAGGAAAGCATTGGATTTCAGCAATCTAACAGAAGCTATCACTGATGCAATAGGAGATACTTCAGATGGCTTGGCTGTTACTCTTGGAATTGCGGCAGCTACCTGCCTAGGCTTCTTGGCTTTCACAGAGATAGAAACGATTCTCCAAGTCTTAGGATCAGCTGCACTTGTTCAGTTTGCAAGCAAGAAGCTCCTATTTGCAGAGGATCGAAAGCAAACATTACGGCAACTAGACGAGTTCTTGAACACCAAGGTTGCTTCTAAAGAGCTTGCTGATGAAGTAAAGCAAATTGGTAAGGCTTTTCTACCAGAAAGTAGCACTCCACAGAAAGCAGAAGCTATTTCTTATACTGTTGCCGAGTCCAAAGTAGACACGCCAGCAGAACCTTCTCCCGAGATAAACTCGGTTCCGGAAACTGAAAACAAGGATGAAACATCTCCGGTGTTGCCGAGACCACAATCTCCATATCCATATTATCCTGATTTCAAGCCTCCAACATCTCTTACCCCTTCACAGCCATATGCTTCCTCGTTGTCACCGTTCTCTGGCTTCGTCATCGGCGCCAGTGACAGTTGCGGAGGCTGTTCGGTGTTCCGTCAATCTGCATTGTTGGGACTCGCTTTTGACAACGTTCCAATGGCAAGAATAAAGCATATTCCAACACCTAGTAAAAAAGGTAAGAAAAAACCAAGACCAACACAATCTCCTTCGCAATCGACTGGTCGCAGAAGGAGGGGAGATGGAGAAGAGGAGCAGGAACCAGAAGCAGGACAACGATCTGCAGCACCAAAGAAAAGGCGTAATAAGCCAGGAACAGTAGCTCTTCGTGAGATTCGTAAATTTCAGAGAACTTTCAAGCTACTCATCCCAGCTGCCCCCTTTGTGAGATGGGTGAGTTGTTGA	1044	0.4607	MEARFVGNSELVAQLVTENGFKAAYAIKDGAEGPRGWTNSGLPWREPRKALDFSNLTEAITDAIGDTSDGLAVTLGIAAATCLGFLAFTEIETILQVLGSAALVQFASKKLLFAEDRKQTLRQLDEFLNTKVASKELADEVKQIGKAFLPESSTPQKAEAISYTVAESKVDTPAEPSPEINSVPETENKDETSPVLPRPQSPYPYYPDFKPPTSLTPSQPYASSLSPFSGFVIGASDSCGGCSVFRQSALLGLAFDNVPMARIKHIPTPSKKGKKKPRPTQSPSQSTGRRRRGDGEEEQEPEAGQRSAAPKKRRNKPGTVALREIRKFQRTFKLLIPAAPFVRWVSC	347

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc211723g00006	347	MobiDBLite	consensus disorder prediction	265	321	-	-
	Stsc211723g00006	347	MobiDBLite	consensus disorder prediction	197	214	-	-
	Stsc211723g00006	347	PANTHER	RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 4, CHLOROPLASTIC	5	220	IPR044240	-
	Stsc211723g00006	347	SUPERFAMILY	Histone-fold	285	345	IPR009072	GO:0046982
	Stsc211723g00006	347	Gene3D	-	3	55	IPR036873	-
	Stsc211723g00006	347	Gene3D	Histone, subunit A	261	346	IPR009072	GO:0046982
	Stsc211723g00006	347	PRINTS	Histone H3 signature	331	347	IPR000164	GO:0000786\|GO:0003677\|GO:0030527
	Stsc211723g00006	347	PRINTS	Histone H3 signature	278	292	IPR000164	GO:0000786\|GO:0003677\|GO:0030527
	Stsc211723g00006	347	PRINTS	Histone H3 signature	307	328	IPR000164	GO:0000786\|GO:0003677\|GO:0030527
	Stsc211723g00006	347	MobiDBLite	consensus disorder prediction	289	309	-	-
	Stsc211723g00006	347	Pfam	Core histone H2A/H2B/H3/H4	284	343	IPR007125	GO:0003677
	Stsc211723g00006	347	MobiDBLite	consensus disorder prediction	179	195	-	-
	Stsc211723g00006	347	MobiDBLite	consensus disorder prediction	166	221	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc211723g00006	Stsc-Chr211723	44039	48364	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc211723g00006	4	154	Sulfurtransferasese or Rhodanese	AT4G01050	70.588	2.86e-62	205

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc211723g00006	K17525		-	gmx:100784482	290.041