Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211722g00004 ATGAAAGCTAAAAACTCCAAAGAAGAAGAAACACAAACACCACGTTTTTGCTGCCTCTCACACCACTTCTCCCGCGTGGCTTCTTCCAATCCTAACAAAATCGCCGTCATTCACGCGTCCGGCGTCGCCCACCTCTCCACGCGCCTGCGCCAAGCTAACTTCGACCATGATAATAATAATAACAATATCACCGCGCTCTTAGAACAGCGCGTGGAATCACTCTCTCCCCCGGTCTACAACGGTGACCGTTGCTTTACTTACTCTCATCTCTTGAAGGCCGTTGATTCCTTCGCCTCTCGTATAAGCTCTATCCTGCTTGGTGCGGATGACCCTCACCTTATCACGCCCAAACCTCAAGGTGATAATGGGGTTAACCTTGAAAAGGGGACTATTTGGACATCTGAGAACTCGGATGCTAATGTGTCTAGCTCAGAGTCGGTGGTTGACTCAAGGGAAGAGTATAGGCCAAAGATAGTGGGAATATATATGCCACCTTCTGTGGAATACATTGTAGCTGTTCTTTCTATATTGAGATGCGGGGAGGCTTTCTTGCCTTTGGACCCTTATTGGCCGAAAGAAAGGTTATTGTCGGTTGTCGCTTCCTCTAGCGCTGATCTCATTATAGGTTCCAAATCTTCGTTCAGTAAAAGTGAGTTGGACCAGCTCGATGAATCGCACTGGCTGGTGAAGTCAGTGAGTTGTCCTGTTATGAGATTCTCCATTGAAGAAAGCCTTCAAGAATATAGTGACTCAACAGATTTGGCATGGCCTTGTGCCAATGAAAGGAAGAGATCGTTCTGTTATCTGATGTACACTTCTGGGTCAACCGGAAAGCCGAAGGGAGTGTGTGGCACTGAACAAGGTCTTTCAAATCGCTTTCTGTGGATGCAAGGATTGTATCCTCTGAATGGGCAAGAAACATTGTTGTTTAAAACATCAATCAGCTTCGTTGATCACCTGCAAGAATTTCTCAGTGCTATTTTGACGGCTTGTATGTTAGTTATTCCTCCTTTCAGTGTTCTCAAAGAAAACATATATTCTATAATAGATTTTCTTCAGGCTTATAGTATTAATAGGCTTACAGCCGTTCCAACACTAATGAAGACAATTCTTCCTGGATTGCAAACTCATGTTGGCCTACGGGTTCAAAGTTCACTGAAATTACTTGTGCTAAGTGGTGAAATGTTTCCTTTGACCTTGTGGGAGAAGCTTTCAACTGTATTACCAAACACATCTATCTTGAATTTATATGGAAGTACTGAGGTCTCAGGTGACTGTACATATTTTGATTGCAAGAGAATGCCATTGGTTTTGAAGGAAGATACGCTAACTAGTGTGCCGATAGGTTTACCCATTACTAATTGTGATGTTTTGCTTCTTGGTGAAAATGTCTCATCAAAGGAGGGAGAGCTATATGTTGGTGGTTCCTGCATCTCTAGGGGCTACTATACTGAGTCTATTATGGAGTCTGAAAAATTTGTAAAATTGCCTCAAAGTTTTGGGATGAATTCCGCGAATAAATGCAAAAGCAAATTATACTTCAGAACTGGTGATTTTGTCAAACAGTTGTCAAGTGGTGACTTTGTATTTTTGGGAAGAAAAGATCGCACCGTAAAAATCAATGGTCATCGTATTGCCCTGGAAGAAATTGAAGATTTGTTAAGAAAGTATCCATATATAAATGATGCTGCTGTAATTTGTCGGAATATCGAAGAAGTTTCACTTCTGGAAGCCTTTATAATATTAGAAGACAAGGAAAGATTGGGCGAATCATTAATACCTGCAATTAGAAGTTGGATGATTAACAAACTTCCATCAGCTATGGTTCCTAATTGTTTCATCTTCACAGATTCATTTCCTGTCTCATCTAGTGGTAAAGTTAATTATGAGATGCTGGCTGACTCAAAATCAGTGACAATGAATGTCAAGGATAAGGTTGTTAACTTTGACTGCAACAGTCTTCTGCGACAAATTAAAAAGGCCTTTCATGATGCTTTAATGGTTGAAAAGGTTTGCAATGATGATGATTTCTTTACCATGGGTGGTAACTCTCTTTCTGCTGCACATGTTGCTCACAATTTGGGGATTGACATGAGATTTCTTTATTACCATCCGAGTCCTTTTAAGCTTTGTATGGCTCTTCTCCAGAAAAGAGGATCCTGCCCTTTGCATAACAATTTGGATAATTGTTTTGAACTAATTACAGATACACTAGATAACTATTTCTCGTTCAGTCATATTGAAAATTCTAATCCCTGTGAGTCAAGGATGATTTCTAAAGGTAATGATATTAATTCCTTACCTTCTAAGCGTTTGAAGAGGGGTTCTACAGATGTTATGTCGAGTGCTGATGAATCTTCCCCGTGGCATTTCTCTTCAATATTTGAATCATCTTCGTTTAGCCGATGCAACAAGGTGTTGCATAAAGGGCAGCCTACAGTTACTGGTACTCAGCAAACAACTTGGTTGGCAAATGTTCCAAGAGGTAGCAGAGGTCATATAAAAGACTGTTGGAAAGTTTACATGGAATCGTGCGTCGATGCTTCACCAATGCTTGTGTCTAAAGGCATAGACATTTATGTATTCATTGGATCTCATTCACATAAATTTCTGTGTGTAAATGCCAGAAGTGGTTCTGTCCAGTGGGAGATCAAATTAGATGGACGTGTTGAATGTACAGCAGCAATTGTATCAGATTTTTCTCAGGTGGTTGTTGGATGCTACTTGGGAAAAATATATTTTCTTGATTTTTCAAGTGGAAATATCTGTTGGAGTTTTCAAACGTCTGGTGAGGTAAAGTCACAACCAGTTGTGGACACTAGAAGACATTTGATCTGGTGTGGCTCTCATGATCATAACTTATATGCCCTTGATTACAAAACTCATTGCTGTGTCTATAAGCTACCTTGTGGAGGCAGTATATATGGATCACCTGCAATTGATGAGTTTCGCGGATTGCTTTATGTGGCTTCTACTGGTGGTCGAATCACAGCTATATCAATATTGGATTCTCCATTTACTGTATTGTGGCTACATGAATTGGAAGTCCCTATCTTTGGTTCTCTGGCAATCACCGGAAACGGAACTGTAATATGTTGCTTAGTAGATGGTCACGTTCTTGCATTGGATCCAAATGGATCCACAGTTTGGAAGCAAACAACTGATGGACCTATATTTGCTGGGCCATGCATGCCTTCTACTCTTCCTCGTGAGGTGCTAGTATGCTCCAGAAAGGGAAGTGTGTACTCTTTCAAACCGGAGAATGGGGATCTATTATGGGAACACAATGCTGGAGATCCAATAACTTTGTCTGCTTATGTTGATGAGCACTTGCAACTAGTCTCTGATGATGCCTCACATTCTCCAGACAGGTTAATCTGCATTTGTTCAAGTTCCGGAAGGATAATCTTGCTTAGAGAGAACCTGAATTCTTTCGAAGACACAAATCGACGGAAAATTGATGTGCAGGAATTTGCAAGGCTGGACTTGCTCGGGGATATATTCTCGTCACCGTTAATGATTGGAGGCCAGATTTTCGTCGGTTGTCGGGACGATTACTTGCACTGTGTTTCTCTTGAAATGCCAAAGAAACATGGAAGTTAA 3603 0.4097 MKAKNSKEEETQTPRFCCLSHHFSRVASSNPNKIAVIHASGVAHLSTRLRQANFDHDNNNNNITALLEQRVESLSPPVYNGDRCFTYSHLLKAVDSFASRISSILLGADDPHLITPKPQGDNGVNLEKGTIWTSENSDANVSSSESVVDSREEYRPKIVGIYMPPSVEYIVAVLSILRCGEAFLPLDPYWPKERLLSVVASSSADLIIGSKSSFSKSELDQLDESHWLVKSVSCPVMRFSIEESLQEYSDSTDLAWPCANERKRSFCYLMYTSGSTGKPKGVCGTEQGLSNRFLWMQGLYPLNGQETLLFKTSISFVDHLQEFLSAILTACMLVIPPFSVLKENIYSIIDFLQAYSINRLTAVPTLMKTILPGLQTHVGLRVQSSLKLLVLSGEMFPLTLWEKLSTVLPNTSILNLYGSTEVSGDCTYFDCKRMPLVLKEDTLTSVPIGLPITNCDVLLLGENVSSKEGELYVGGSCISRGYYTESIMESEKFVKLPQSFGMNSANKCKSKLYFRTGDFVKQLSSGDFVFLGRKDRTVKINGHRIALEEIEDLLRKYPYINDAAVICRNIEEVSLLEAFIILEDKERLGESLIPAIRSWMINKLPSAMVPNCFIFTDSFPVSSSGKVNYEMLADSKSVTMNVKDKVVNFDCNSLLRQIKKAFHDALMVEKVCNDDDFFTMGGNSLSAAHVAHNLGIDMRFLYYHPSPFKLCMALLQKRGSCPLHNNLDNCFELITDTLDNYFSFSHIENSNPCESRMISKGNDINSLPSKRLKRGSTDVMSSADESSPWHFSSIFESSSFSRCNKVLHKGQPTVTGTQQTTWLANVPRGSRGHIKDCWKVYMESCVDASPMLVSKGIDIYVFIGSHSHKFLCVNARSGSVQWEIKLDGRVECTAAIVSDFSQVVVGCYLGKIYFLDFSSGNICWSFQTSGEVKSQPVVDTRRHLIWCGSHDHNLYALDYKTHCCVYKLPCGGSIYGSPAIDEFRGLLYVASTGGRITAISILDSPFTVLWLHELEVPIFGSLAITGNGTVICCLVDGHVLALDPNGSTVWKQTTDGPIFAGPCMPSTLPREVLVCSRKGSVYSFKPENGDLLWEHNAGDPITLSAYVDEHLQLVSDDASHSPDRLICICSSSGRIILLRENLNSFEDTNRRKIDVQEFARLDLLGDIFSSPLMIGGQIFVGCRDDYLHCVSLEMPKKHGS 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211722g00004 1200 Gene3D - 651 714 IPR036736 -
Stsc211722g00004 1200 Pfam AMP-binding enzyme C-terminal domain 549 626 IPR025110 -
Stsc211722g00004 1200 SMART ire1_9 1065 1096 IPR018391 -
Stsc211722g00004 1200 SMART ire1_9 894 927 IPR018391 -
Stsc211722g00004 1200 SMART ire1_9 850 885 IPR018391 -
Stsc211722g00004 1200 SMART ire1_9 1022 1053 IPR018391 -
Stsc211722g00004 1200 Pfam PQQ-like domain 984 1191 IPR002372 -
Stsc211722g00004 1200 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 846 1193 IPR011047 -
Stsc211722g00004 1200 SUPERFAMILY Acetyl-CoA synthetase-like 35 634 - -
Stsc211722g00004 1200 CDD A_NRPS 155 632 - -
Stsc211722g00004 1200 SUPERFAMILY ACP-like 652 712 IPR036736 -
Stsc211722g00004 1200 FunFam Putative acyl-activating enzyme 19 1004 1193 - -
Stsc211722g00004 1200 ProSitePatterns Putative AMP-binding domain signature. 269 280 IPR020845 -
Stsc211722g00004 1200 PANTHER BETA-ALANINE-ACTIVATING ENZYME 16 1193 - -
Stsc211722g00004 1200 Pfam AMP-binding enzyme 158 540 IPR000873 -
Stsc211722g00004 1200 Gene3D - 125 534 IPR042099 -
Stsc211722g00004 1200 Pfam PQQ-like domain 920 961 IPR002372 -
Stsc211722g00004 1200 Gene3D - 1004 1197 IPR015943 GO:0005515
Stsc211722g00004 1200 Gene3D - 808 1003 IPR015943 GO:0005515
Stsc211722g00004 1200 ProSitePatterns Phosphopantetheine attachment site. 679 694 IPR006162 -
Stsc211722g00004 1200 Gene3D - 535 645 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211722g00004 Stsc-Chr211722 13318 20350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211722g00004 269 627 Monolignol Biosynthesis Gene Families AT1G20480 21.739 7.13e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211722g00004 K00142 - gmx:100820175 1771.52