Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211718g00007 ATGCTCTTCACCCTCCCTAAGCTTCAGCTTTTTGAAATTGGTGACAATCAGATGTCAGGTTTAATCCCTAGTTCAATCACTAATGCCACCCTTCTTGAAAGATTTGATATCACTGATAACAGTTTCTTTGGGGGAGTTCCAAGTTTAGCAAAGCTGCAACATCTTTGGTGGTTAAATCTTGGTTTGAATTATCTAGGCAGTAATTCAGCTAAGGACTCTGAGTTCTTAGAATCTTTGCAAAGCTGTAGTAAGTTGGAAATGCTATCCATAGCTATCAACAATTTCAGAGGTCATTTACCTGAAAACATAGGAAACTTTTCCACCCTACTCAGAGAAGTTTACCTTGGTTATAATCTACTGTCTGGAAAAATTCCTGTCACATTACCAAATCTCATAAATTTAGACCTCTTCACCATGGAATTTAACTATTTTACTGGAACCATTCCAACATCCTTTTGGAAATTTCAAACAATAGAAACATTGGATTTGAGTTATAACCTGTTGTCAGGAGAGATTCCAGCCATTATAGGCAACCTTAGCCATTTGCTTGAGCTGAGAATGTCAGACAATATGTTAGAAGGAAATATTCCTCCAAGCATAGGAAATTGCCACAATTTAGAAATTTTAGACCTTGGAAATAACAACCTTAGTGGAATGATACCTTCACAAGTTATTAGTCTTTCCTCTTTGACAATCCTACTGAACTTATCCGAAAATTCATTGACAGGCAGTCTTTCGGAGCAAGTGAGTAGGTTGAAATTTATTCGTCAGTTGGATGTCTCGAAAAATCATCTGTCTGGTTACATTCCTGAAGCTATTGGGGGATTGATAAACCTGGAGTACCTTAATTTACAAGGGAATTCCTTCAATGGAACCATACCTTCATCTCTGGCTTTGGTGAAGAGTCTCCAACATTTAGACCTGTCAACTAACAACTTGTCTGGATCGATTCCAGTGGCTCTAGAGGATATGTCTTTACTAGAATACCTAAATGTTTCTTTTAACAAGTTGGATGGTGAAGTGCCAACAAAAGGTGTCTTCAAAAATGCAACTGCAATAGCAGTGATTGGTAATAGTAAGCTTTGTGGGGGAATCTCTAAGCTACAACTACCACCATGCCAAGGTTCAAGATATCGAAAACATCATAATTTCAAGCTGATAGCAGTGATTGTTTCCATGGTTGCTTTTCTTCTTATTTTGTCTTCTATGTTTGCACTTTATAAGATGAGAAAAAGAAAGAATGAACCATTTTCTAATTCAGTATCAGTTGATCAGCTTGATATGGTGTCATATCAAAACCTTCACCAGGCAACTAATTGTTTCTCAGCTAACAATTTGATAGGATCTGGACATTTTGGTTCTGTCTACAAGGGAAACCTTGATTCAACTGACAAAGCCGTTGCTATAAAGGTCCTCAACCTACAAAAGAAAGGAGCTCACAGGAGTTTCATTGCTGAATGTAATGCACTAAAAAGCATTAGGCATCGAAATTTGGTTAAGATTTTAACATGCTGCTCAAGCACAGATTACAAGGGCCAAGAATTCAAAGCTCTAGTTTTTAAATACATGGAAAATGGAAGCTTAGATAAATGGCTGCATCCAGATACTGAAAGTGTAGATGTGCCACAAACCTTGAGCCTTAATCAGAGAATAAGAATTCTAATTGATGTTGCTTCAGCAATGCATTATCTTCACTATGAATGTGAGCAAGCTGTCATTCATTGTGATATAAAGCCAAGCAACATCCTTCTTGATAATGACATGGTTGCTCATGTGGGTGACTTCGGATTAGCTAGAATTCTCTCAACTATTAATGGCACCACTTATGAGCAAAACTCTACATCTGGAATCAAGGGAACTATTGGTTACACTCCTCCAGAGTATGGAATGGGTTCCGAGGCGTCAAAACAAGGCGACGTATATAGCTTTGGGATTCTTATTCTGGAAATGCTCACAGGAAGAAGACCTATTGAGGAAACTTTTGAAAATGGTCAAAATCTCCATAGCTATGTGAAAATGAAGTTGACAGATAAAATCTTCCAGATGGTAGACCCGGTTATTCTGTATACAGAAATAAATGGAACAAGAGCAGCAGCAGAAAACAGCATGGGGAACTTGACACTAAAACGTTCTAATGCAGACAAGTGTTTACATTCACTATTTAAGATTGGACTTGCTTGTTCAGTGGAGCCACCAAAAGAAAGAATGAGCATGGAGGATGTCATCATAGAGCTAAACCTAATAAATAATTCCTTCAAGATTGACTAG 2268 0.377 MLFTLPKLQLFEIGDNQMSGLIPSSITNATLLERFDITDNSFFGGVPSLAKLQHLWWLNLGLNYLGSNSAKDSEFLESLQSCSKLEMLSIAINNFRGHLPENIGNFSTLLREVYLGYNLLSGKIPVTLPNLINLDLFTMEFNYFTGTIPTSFWKFQTIETLDLSYNLLSGEIPAIIGNLSHLLELRMSDNMLEGNIPPSIGNCHNLEILDLGNNNLSGMIPSQVISLSSLTILLNLSENSLTGSLSEQVSRLKFIRQLDVSKNHLSGYIPEAIGGLINLEYLNLQGNSFNGTIPSSLALVKSLQHLDLSTNNLSGSIPVALEDMSLLEYLNVSFNKLDGEVPTKGVFKNATAIAVIGNSKLCGGISKLQLPPCQGSRYRKHHNFKLIAVIVSMVAFLLILSSMFALYKMRKRKNEPFSNSVSVDQLDMVSYQNLHQATNCFSANNLIGSGHFGSVYKGNLDSTDKAVAIKVLNLQKKGAHRSFIAECNALKSIRHRNLVKILTCCSSTDYKGQEFKALVFKYMENGSLDKWLHPDTESVDVPQTLSLNQRIRILIDVASAMHYLHYECEQAVIHCDIKPSNILLDNDMVAHVGDFGLARILSTINGTTYEQNSTSGIKGTIGYTPPEYGMGSEASKQGDVYSFGILILEMLTGRRPIEETFENGQNLHSYVKMKLTDKIFQMVDPVILYTEINGTRAAAENSMGNLTLKRSNADKCLHSLFKIGLACSVEPPKERMSMEDVIIELNLINNSFKID 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211718g00007 755 Gene3D Ribonuclease Inhibitor 1 376 IPR032675 -
Stsc211718g00007 755 FunFam LRR receptor-like serine/threonine-protein kinase EFR 71 379 - -
Stsc211718g00007 755 ProSitePatterns Protein kinases ATP-binding region signature. 447 470 IPR017441 GO:0005524
Stsc211718g00007 755 SMART serkin_6 441 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211718g00007 755 FunFam LRR receptor-like serine/threonine-protein kinase EFR 411 522 - -
Stsc211718g00007 755 ProSiteProfiles Protein kinase domain profile. 441 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211718g00007 755 Gene3D Phosphorylase Kinase; domain 1 402 522 - -
Stsc211718g00007 755 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 523 755 - -
Stsc211718g00007 755 ProSitePatterns Serine/Threonine protein kinases active-site signature. 572 584 IPR008271 GO:0004672|GO:0006468
Stsc211718g00007 755 SUPERFAMILY L domain-like 109 363 - -
Stsc211718g00007 755 SUPERFAMILY L domain-like 2 152 - -
Stsc211718g00007 755 Gene3D Transferase(Phosphotransferase) domain 1 523 754 - -
Stsc211718g00007 755 Pfam Leucine rich repeat 278 337 IPR001611 GO:0005515
Stsc211718g00007 755 Pfam Protein kinase domain 443 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211718g00007 755 PANTHER LEUCINE RICH REPEAT KINASE 2 73 746 - -
Stsc211718g00007 755 SUPERFAMILY Protein kinase-like (PK-like) 415 746 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211718g00007 Stsc-Chr211718 28539 31019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211718g00007 5 752 Receptor kinase-like Gene Family AT3G47570 43.890 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc211718g00007 Pkinase 3.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211718g00007 - - ahf:112783139 1045.42