Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211717g00008 ATGAAGGAAGAGGTTCGTGTACTGGAGATCAACTTGATCTCCGCTCAGGGACTCCAACCAATTTCTTCTCCGCTTCGGAAGCTCCAAACATACGCTCTTACATGGATTGATCCATCAACGAAGCTCCGAACCAGAGTTGATAATCTTGGCGGTCAAAACCCTACTTGGAACGATAAGTTCCTCTTCCGCGTCACGCCGGGGTTTCTTTCCGGCGAAACTTCCGCCGTCTCGGTCGCCATTTACACCGTCGGAACATTCCGTGATCATCTCGTCGGAACCGTCACGTTCTTCATCGGGAACGTCTTATGCGGCGGCGTCGGAGCACCTTGCTTCAGCGCGTTTCAGATTCGCCGGCCCTCCGGGAGGTTCCAGGGCGTAATGAATATCGGAGCCATGGTTGCCGACGTCTCTGATTTTCCGGCGCTTCTTAAGATATCGGCAATAGGCTATAGAGACTTGATGGGGATGAAAATGAAGGAGCAGAGGAAGAAAAAGAAGAAGAATAAGGCGCCGGAGGAGGAAGCTTTGACCGATTCTTGCGAGAATTCTTGTGTGGATTCGGTGGAGGAAGCGGATTCGTCGTCATCTTCTTCGTCACTGTCACCGAGTACAATGGGGGCTGCTACGGTGTTGAAGGAATGGAATGGGGTCAGGGAATTGGCGGAAAACACCGCTTCTGGTTTCTTGTGTTGCTTCATGGTAGCTCCAAGATGCATCCAACCTGTTACTGAGGACCATAGTCTTCGCACGAAATCAAGCAGGTTATTGAGGAATGGTAAATCAATGGGAGTGATTGCATCTAAGAACTTGTCTCGAGTTGATGATGCTACAGAGGAAAATGTGATGGATTGGGTCAAGCATGACAACCGAAGAATGCTTCATGTTGTATATCGTGTTGGGGACTTGGAAAGGACCATAAAATTTTATACAGAGTGCCTGGGGATGCAGGTTCTTAGAATCCGCGACTTGCCGGAGCTTAGATGTGCTAATGCCTTTCTTGGTTATGGACGTGAAGATGAACACTTTGTTATTGAACTGACATACAATTATGGGACTGATGAGTATGACATTGGAAATGGATTTGGCCACTTTGGTGTTTCTTTTGATGATATTTCAAGCATAGTGGACACTGTAAGAGATAATAAGGATGGAAAAATAATTACGGAGCCCGGTCCTGTCAATGGAAGCTGCTCCATAATTGCATTTATTGAAGATCCTGATGGTTATAAATTTGAACTTCTGGAAAGAGTTCCCTCTCATGAACCTTTGTGCCGAGTGATGCTTCGAGTGGGTGATCTTAATCGATCCATCGAATTTTATGAGAAGGCTTGTGGTATGCAGCTACTTCTTACACGAGATAATCCAGAAAGCCAGTATACCATAGCAATCATGGGTTATGGCCCAGAAGATGAAACTGCTGTTCTGGAGTTGACTTACAATTATGGAGTCACAGAATATGATAAAGGAGATGGTTATGCTCAGATAGCAATAGGCACAGATGATGTGTACAGAACTGCAGAAGCAATCAAACTTGCCGGAGGGAAGATCACCCGCGAACCTGGACCGGTACCTGGCATCGGAACAAAAATAACTGCATGCCTGGACCCTGATGGTTGGAAAACGGTTTTTTTGGATAATGTCGATTTCCTTAGGGAGTTAGAGTAA 1665 0.4631 MKEEVRVLEINLISAQGLQPISSPLRKLQTYALTWIDPSTKLRTRVDNLGGQNPTWNDKFLFRVTPGFLSGETSAVSVAIYTVGTFRDHLVGTVTFFIGNVLCGGVGAPCFSAFQIRRPSGRFQGVMNIGAMVADVSDFPALLKISAIGYRDLMGMKMKEQRKKKKKNKAPEEEALTDSCENSCVDSVEEADSSSSSSSLSPSTMGAATVLKEWNGVRELAENTASGFLCCFMVAPRCIQPVTEDHSLRTKSSRLLRNGKSMGVIASKNLSRVDDATEENVMDWVKHDNRRMLHVVYRVGDLERTIKFYTECLGMQVLRIRDLPELRCANAFLGYGREDEHFVIELTYNYGTDEYDIGNGFGHFGVSFDDISSIVDTVRDNKDGKIITEPGPVNGSCSIIAFIEDPDGYKFELLERVPSHEPLCRVMLRVGDLNRSIEFYEKACGMQLLLTRDNPESQYTIAIMGYGPEDETAVLELTYNYGVTEYDKGDGYAQIAIGTDDVYRTAEAIKLAGGKITREPGPVPGIGTKITACLDPDGWKTVFLDNVDFLRELE 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211717g00008 554 Pfam C2 domain 8 99 IPR000008 -
Stsc211717g00008 554 NCBIfam lactoylglutathione lyase 291 416 IPR004361 GO:0004462|GO:0046872
Stsc211717g00008 554 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 426 540 IPR004360 -
Stsc211717g00008 554 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 292 413 IPR004360 -
Stsc211717g00008 554 ProSitePatterns Glyoxalase I signature 2. 358 370 IPR018146 GO:0004462|GO:0046872
Stsc211717g00008 554 Gene3D C2 domain 4 107 IPR035892 -
Stsc211717g00008 554 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 422 546 IPR037523 -
Stsc211717g00008 554 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 290 420 IPR029068 -
Stsc211717g00008 554 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 423 544 IPR029068 -
Stsc211717g00008 554 CDD C2_SRC2_like 8 129 IPR044750 GO:0006952
Stsc211717g00008 554 Gene3D - 419 554 IPR029068 -
Stsc211717g00008 554 FunFam Lactoylglutathione lyase 419 554 - -
Stsc211717g00008 554 ProSiteProfiles C2 domain profile. 1 111 IPR000008 -
Stsc211717g00008 554 SMART C2_3c 7 110 IPR000008 -
Stsc211717g00008 554 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 133 IPR035892 -
Stsc211717g00008 554 Gene3D - 264 416 IPR029068 -
Stsc211717g00008 554 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 291 416 IPR037523 -
Stsc211717g00008 554 ProSitePatterns Glyoxalase I signature 1. 294 315 IPR018146 GO:0004462|GO:0046872
Stsc211717g00008 554 PANTHER LACTOYLGLUTATHIONE LYASE 275 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211717g00008 Stsc-Chr211717 50117 53702 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211717g00008 423 543 Calmodulin-binding Proteins AT1G08110 25.850 1.03e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211717g00008 K01759 - gmx:100775714 472.626