Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211717g00005 ATGGAACGCATCATCGCCTCCAAGTACAAGCTCGGCCGCAAGATCGGAAGCGGTTCCTTCGGCGAAATCTACCTAGCTACGCATGTTGATACCTTCGAGATCGTCGCCGTCAAGATCGAGAACACTAAAACGAAGCATCCTCAATTGCTTTATGAGGCCAAGCTTTACAATATTCTCCAAGGAGGAAGCGGCATTCCTAGCATTAGATGGTCTGGTGTAGATGGGGAAGATAATGTGCTTGTGATGGATTTGCTGGGGCCTAGTCTTGAGGATCTCTTTGTGTATTGTGGAAGGAAGTTCTCATTGAAAACAGTGTTGATGTTGGCTGATCAAATGATGACTAGAATAGAATATGTGCATTCCAAAGGGTTTCTGCATAGAGATATAAAGCCTGATAACTTCCTTATGGGACTTGGTCGGAAAGCAAACCAGGTTTACATTATTGATTTTGGGCTTGCAAAACGATATCGGGACTCTACAACCAATCGTCACATCCCTTACAGGGAGAACAAAAACTTAACAGGGACTGCACGCTATGCAAGTTGCAATACGCATCTTGGGATTGAGCAAAGTCGGCGGGATGATTTGGAGTCATTGGGATATGTGCTTCTGTACTTTCTCAGAGGAAGCCTTCCTTGGCAAGGTCTAAAGGCTGCAACAAAGAAGCAAAAGTATGATAAAATATGTGAGAAGAAAGTGTCAACCCCTATTGAGGTTCTTTGCAAATCTCATCCTGTAGAGTTTGCTTCATACTTCCATTACTGCCATTCTCTGACCTTTGATCAGCGACCTGACTATGGATTCTTGAAGCGCCTATTTCGGGAACTGTTTGCTAGGGAAGGATATGAATTTGATTATGTGTTTGATTGGACTATTTTAAAGTACCAGCAGGCACAAAAGAATAGAGTCCAGCCACCTTCATCTGTGGTCCCAGGAGCAAGCAACAGTCGTGCAACACCAATGGATGTTGACAACCATCGAGGTGATGCTACAGAGCACATAAAATCAGGCAATGCCACTGGCTCAGGTGTTAAATTTCAGTTTAAATCACCTGTGGTTAAAAATCCACTCGACAAGAATGAAAAGAATATTTTTGGTGAAGCAAATATGCCATCTACTTCCCATTCTCATGCTGGTCCCTCAAAAAGGAACTCCTTGAAGCCTGCTCCATCTTCTGATGCTGTTCACCCTGGCCACGGGCAAGGAAGTAAAGTTGGCCCTTCAAGTAGCTGGATTTCATCTCTTCATCGCATATCTTCTGCCAAATAA 1269 0.4381 MERIIASKYKLGRKIGSGSFGEIYLATHVDTFEIVAVKIENTKTKHPQLLYEAKLYNILQGGSGIPSIRWSGVDGEDNVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMTRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICEKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRELFAREGYEFDYVFDWTILKYQQAQKNRVQPPSSVVPGASNSRATPMDVDNHRGDATEHIKSGNATGSGVKFQFKSPVVKNPLDKNEKNIFGEANMPSTSHSHAGPSKRNSLKPAPSSDAVHPGHGQGSKVGPSSSWISSLHRISSAK 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211717g00005 422 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211717g00005 422 MobiDBLite consensus disorder prediction 301 321 - -
Stsc211717g00005 422 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211717g00005 422 CDD STKc_CK1_delta_epsilon 8 282 - -
Stsc211717g00005 422 FunFam Casein kinase I isoform delta-like 1 340 - -
Stsc211717g00005 422 MobiDBLite consensus disorder prediction 363 422 - -
Stsc211717g00005 422 MobiDBLite consensus disorder prediction 366 388 - -
Stsc211717g00005 422 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Stsc211717g00005 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Stsc211717g00005 422 MobiDBLite consensus disorder prediction 403 422 - -
Stsc211717g00005 422 Gene3D Transferase(Phosphotransferase) domain 1 1 337 - -
Stsc211717g00005 422 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Stsc211717g00005 422 MobiDBLite consensus disorder prediction 301 343 - -
Stsc211717g00005 422 PANTHER CASEIN KINASE-RELATED 8 353 - -
Stsc211717g00005 422 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211717g00005 Stsc-Chr211717 27807 31548 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211717g00005 9 215 EF-hand Containing Proteins AT4G23650 29.577 3.53e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Stsc211717g00005 Pkinase 2.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211717g00005 K08960 - gmx:100805890 751.51