Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211716g00006 ATGTTCCGTTTTCAGAATTTCTCCATTTTGCTGTTGGTTATTCTTTTCCTGGTGTCAAGACTAGTAAACGGTCGATGTACGGATAAATGCGGACGCATCAAGATCCAATTCCCGTTTTATCTCAGAGATAGCAACCTGAATAATCTTGAAAACGCTACCTATCTACCTGGATTTGAACTCTCGTGTAACGATGAAGATCAAACTCTGCTTAAACTCCCAAAGGCTAAATCATTAAGCTTCTTTGTGAAGAAAATAGATTACAAATCTCAGCAAATTCAGATCTACGACCCTAATAACTGCCTTCCCAGCCAGCTTTTAGCGCTCGGAAATTCTTCAACCTCTCCCTTCCGATTCATATCGGTAGATTACGGCGGAGAAACTATCAGCAGTAACGTATCATTTTTTAGTTGCCCTTCGAGTTCTTCCTCCAATTCCTGCCCAATTGTGGAACTTGATTCGAGTAGCGACTTCATTGATCCGGGAATACTATCGTGCGCCAAGGTGCGTGATGTTATATCGGTGGAGTGGAGGTTTGCGTATGATGACAAGAGTAGTTTGTTTCTTGGATGGTCGAACCCCAACTGTGGGCAGTGTGAAGCACAGGGAAAGAAATGCAGATTCAAGAGCGATGGTGCGAAGAAAGAGGAAATTGAGTGTTACATTTGCAAAACAAACAACATCTCGACATCAACACGTGTTCTAATTGTTGCAGGGACAATAATCGGTTTGATGCTTTTGCTCTTGTTGGCCTTTGCAGTGTACCATATTTATCGGTACTTTAAGACTAAAGGAGAAGACAAAGATAGGATAGAAAAATTCTTGGAGGATTACAGGGCCATGAAGCCTACAAGATTCACCTACAAAGATATTAAGAGAATCACAAATGGTTTTAAGGAAAGCTTAGGAGAAGGAGCACACGGAGCAGTGTTCAAAGGAATGCTCTCCAAAGAAATTCTTGTTGCCGTGAAGATACTCAATGATACACAGGGTGATGGAAAAGATTTCATAAATGAAGTGGCAACTATGGGAAAGATTCATCATGTCAATGTTGTTCGCTTGCTTGGATTCTGCGCCGACGGATTCCACCGTGCTCTTGTCTACGATTTATTTCCAAACGGTTCGTTGCAGAAATTCTTAGCTCCACCGGATAACAGAGATTTTTTCCTTGGTTGGGTGAAGCTACAGAGAATTGCTCTTGGTGTTGCAAAAGGCCTTGAGTATCTTCATCTTGGTTGTGATCATAGGATACTCCATTTTGACATAAATCCCCACAATGTGCTACTTGATGACCACTTCACTCCAAAAATTACTGATTTTGGACTTGCCAAGTTGTGTCCGAAGAATCAAAGCACAGTGTCGATGACTGCGGCGAGGGGGACACTGGGCTACATTGCCCCTGAGGTATTCTCAAGAAACTTCGGTAACGTGTCGTATAAGTCAGATATTTATAGCTTCGGAATGTTGCTACTTGAGATGGTTGGAGGAAGAAAGAACACAAATGTGTCTGGTGAGGAAATTTTCCAAGTTTTGTACCCTGAATGGATCCATAATATGCTTGAAGGAAAAGACATCCACATTGATATTGACAAAGAAGAAGACATGAAAATTGCAAAGAAACTTGCCATTGTAGGACTTTGGTGCATCCAATGGAATCCTGTAGATCGTCCATCCATGAAAACCGTGGTTCAAATGCTTGAAGGGGAAGGAGATAAGTTAATGGTTCCCCCTACTCCGTTTGACTCTACTACCAGCTCAAGTAGAAATAATAATAATGCAGTTGTTCCATCAAGATACCTAAATTTTGAGCTTGAGGCTATTCCTGAATAA 1827 0.4149 MFRFQNFSILLLVILFLVSRLVNGRCTDKCGRIKIQFPFYLRDSNLNNLENATYLPGFELSCNDEDQTLLKLPKAKSLSFFVKKIDYKSQQIQIYDPNNCLPSQLLALGNSSTSPFRFISVDYGGETISSNVSFFSCPSSSSSNSCPIVELDSSSDFIDPGILSCAKVRDVISVEWRFAYDDKSSLFLGWSNPNCGQCEAQGKKCRFKSDGAKKEEIECYICKTNNISTSTRVLIVAGTIIGLMLLLLLAFAVYHIYRYFKTKGEDKDRIEKFLEDYRAMKPTRFTYKDIKRITNGFKESLGEGAHGAVFKGMLSKEILVAVKILNDTQGDGKDFINEVATMGKIHHVNVVRLLGFCADGFHRALVYDLFPNGSLQKFLAPPDNRDFFLGWVKLQRIALGVAKGLEYLHLGCDHRILHFDINPHNVLLDDHFTPKITDFGLAKLCPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSFGMLLLEMVGGRKNTNVSGEEIFQVLYPEWIHNMLEGKDIHIDIDKEEDMKIAKKLAIVGLWCIQWNPVDRPSMKTVVQMLEGEGDKLMVPPTPFDSTTSSSRNNNNAVVPSRYLNFELEAIPE 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211716g00006 608 PANTHER RUST RESISTANCE KINASE LR10-RELATED 266 585 IPR045874 GO:0004672
Stsc211716g00006 608 FunFam PR5-like receptor kinase 370 576 - -
Stsc211716g00006 608 Pfam Protein kinase domain 298 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211716g00006 608 Gene3D Phosphorylase Kinase; domain 1 268 369 - -
Stsc211716g00006 608 ProSiteProfiles Protein kinase domain profile. 295 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211716g00006 608 SUPERFAMILY Protein kinase-like (PK-like) 273 566 IPR011009 -
Stsc211716g00006 608 FunFam serine/threonine-protein kinase PBS1-like 263 369 - -
Stsc211716g00006 608 Pfam Wall-associated receptor kinase galacturonan-binding 26 96 IPR025287 GO:0030247
Stsc211716g00006 608 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Stsc211716g00006 608 Gene3D Transferase(Phosphotransferase) domain 1 370 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211716g00006 Stsc-Chr211716 36947 39762 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211716g00006 56 578 Receptor kinase-like Gene Family AT1G66910 36.979 4.18e-106 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc211716g00006 Pkinase 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211716g00006 - - gmx:100819302 806.979