Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211716g00004 ATGATTCACGGCGTATGGTTCTTCAAGTTAATGTTCAAGGGCCATGATATGCTTGCCCCTTTCACAGCTGGGAGGCAGACAACCGATGTGAATCCTTTGGTTATAGACAAGTCAGAGGGAAGCTATGTATATGACATTAATGGGAAGAAGTATCTTGACTCACTTGCTGGTCTATGGTGCACAGCTCTAGAAGCAAATGACACTCAGTGTATCTCGGGCTCTGCAAGGCCGAGATACGTGTTTAGTGTGCCCGAGATAAATAAAGAGCACTTAAAAATATTACTCTCAACCCTTTTCACAATCCTCCTCCTTTTCCAACAACCATCCACCGCCAAGAAGCACCACTCACCATGCCCTCCTTCTTCCTGCGGCAAAATCCGCAACATAACAAACCCATTCCGACTCAAAGGCGACCCAAGCCACTGCGGCAACAAAAAATACGAACTCGAATGCGATAACAACAACACAACACTCCTAACTCTCTTCTCCGGTAACTACCACGTTCACGACATCAATTACAAGAACTACAGCATCAAATTGAGTGATGCAGGCCTCACCGACAACGCTAATTGTGCATTCATCCCTCTCAGTTTCTTGTACGACGGCAGTTTCAAGTTCGCCATCGGCCCCGACGATTTCGGATCGCAGCCGTTCACTTTGAACAATTTCGATCCAGATACGGTAGATCCTTTCGATCCATTCAGAGTAGCGTATTTCAACTGCACCGATGCAGTTACTGACGACGATGTATACGTGAAGGTAGATAGTAATAACAACACTGCAAGAGGTTGTAGTGGGTTGGAGTTGGGGAACGGGTATGTAATAGTGGAACCATCGCGTTATTCGTACGGTTTGAGTGACATCAAGGTTGGGTGCAGTTTGATGGTGGCGACGCTAACGGATAAGGTTCCGGCGGAGATGGGAAAAGGGAATCGAAACGTTTCTTATGAAGAGATCCGGAAAGCGGTTGGGGAAGGGTTTAGCGTGTCTTGGTTGCCGGCGGTTTGTGAGGAGAAGTGTGGAAAGAAGACAAATTGCAAGGTGGTCAATGGAACGACGGGAGAAGTCCAATGTGACAAGCGCTATTGCCACTACGCTTACCATACAACCGATAAGTGCGGAATTACACAACAAGCTATTGGTTATGTTCGAGGATTAGGAAGTAGAATTACATTCAGCACAAGACAACTGAACAACGCAGTTGGGCTGCAATATTTTGATGCGGGGATATACATTGGTAGAAACATTATACCAATAATACTAGTAACCAGATACGTGCTTGGAGTTGCACTTCTACTTGCCGTATTAATCTACATATGGCGACGAAGACATTGGTCTATATATGGAAACATTGAACATTTTTTGCTAGACAGCAATCTAAATCCCATAAGGTATGAATACAAGGAAATCAAGAAAATGAGTGGTGGTTTCAAAGTGAAATTGGGTAAAGGTGGATTCGGCGCTGTATACAAAGGAAAACTTCGTAGTGGTCCTGATGTAGCAATAAAGATGTTGAACCAATCCAATGCTAATGGCCAAGACTTCATCAACGAAGTTGCTACGATTGGAAGAATACATCATGTTAATGTGGTGCGTCTTGTCGGATACTGTGCCGAGAAGAAAAAGCGTGCTCTGGTGTATGAATTCATGCCTAACGGATCACTCGATAAATACATATTCGCCAAGGAAGGGACCGTGCCTTTAAGTTATGAGAAGATGTATGAAATATCTCTCGGGGTGGCTCGTGGAATTGCGTATTTGCATCAAGGTTGTGACATGCAAATTCTACATTTTGATATCAAGCCGCATAATATTCTTCTGGATGATAGCTTCGTTCCGAAGGTATCAGATTTCGGACTAGCAAAGCTATATCCGGTGGATGATAGCACTGTTACTTTGACTGCGGCGAGAGGAACTTTAGGGTACATGGCTCCGGAGTTGTTCTACAAAAACATCGGAGGAGTGTCTTATAAGGCTGATGTATATAGCTTTGGAATGCTTTTGATGGAAATGGCGAGTAGGAGGAAGAATTCAAATGCTAATGCCGATGAATCAAGCCAATTTTTCTTCCCATTTTGGATACATGATCAAATTTATGAGGAGAGAGATATTGAAATCGAAGATGCCTCAGAGGAGGAAAAGATTCTAGTTAAAAGGATGTTCATAGTTGCGCTTTGGTGCATACAGCTAAAGCCTAGTGATCGCCCTTCAATGAACAAGGTAGTACAGATGTTGGAGGACAAGGAAGAAATTCTTGCAATGCCTCCAAAGCCTTCTTTCTATTTGAATGAAGCTTCTAGACATGATAAGGAAGTAAATTCCGACCAAGCGTCGAACATGGATTCCTCTAGTACTAGTTATCATGGTGAAACCACTTACTATTCAATCAATGGAGGATGA 2400 0.4346 MIHGVWFFKLMFKGHDMLAPFTAGRQTTDVNPLVIDKSEGSYVYDINGKKYLDSLAGLWCTALEANDTQCISGSARPRYVFSVPEINKEHLKILLSTLFTILLLFQQPSTAKKHHSPCPPSSCGKIRNITNPFRLKGDPSHCGNKKYELECDNNNTTLLTLFSGNYHVHDINYKNYSIKLSDAGLTDNANCAFIPLSFLYDGSFKFAIGPDDFGSQPFTLNNFDPDTVDPFDPFRVAYFNCTDAVTDDDVYVKVDSNNNTARGCSGLELGNGYVIVEPSRYSYGLSDIKVGCSLMVATLTDKVPAEMGKGNRNVSYEEIRKAVGEGFSVSWLPAVCEEKCGKKTNCKVVNGTTGEVQCDKRYCHYAYHTTDKCGITQQAIGYVRGLGSRITFSTRQLNNAVGLQYFDAGIYIGRNIIPIILVTRYVLGVALLLAVLIYIWRRRHWSIYGNIEHFLLDSNLNPIRYEYKEIKKMSGGFKVKLGKGGFGAVYKGKLRSGPDVAIKMLNQSNANGQDFINEVATIGRIHHVNVVRLVGYCAEKKKRALVYEFMPNGSLDKYIFAKEGTVPLSYEKMYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDDSFVPKVSDFGLAKLYPVDDSTVTLTAARGTLGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASRRKNSNANADESSQFFFPFWIHDQIYEERDIEIEDASEEEKILVKRMFIVALWCIQLKPSDRPSMNKVVQMLEDKEEILAMPPKPSFYLNEASRHDKEVNSDQASNMDSSSTSYHGETTYYSINGG 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211716g00004 799 Pfam Wall-associated receptor kinase galacturonan-binding 118 182 IPR025287 GO:0030247
Stsc211716g00004 799 Gene3D Aspartate Aminotransferase, domain 1 11 76 IPR015422 GO:0003824
Stsc211716g00004 799 SUPERFAMILY PLP-dependent transferases 18 63 IPR015424 -
Stsc211716g00004 799 ProSitePatterns Serine/Threonine protein kinases active-site signature. 595 607 IPR008271 GO:0004672|GO:0006468
Stsc211716g00004 799 Pfam Protein kinase domain 479 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211716g00004 799 PANTHER RUST RESISTANCE KINASE LR10-RELATED 446 768 IPR045874 GO:0004672
Stsc211716g00004 799 SUPERFAMILY Protein kinase-like (PK-like) 462 746 IPR011009 -
Stsc211716g00004 799 Gene3D Phosphorylase Kinase; domain 1 456 549 - -
Stsc211716g00004 799 CDD STKc_IRAK 481 746 - -
Stsc211716g00004 799 FunFam PR5-like receptor kinase 550 757 - -
Stsc211716g00004 799 ProSitePatterns Protein kinases ATP-binding region signature. 481 503 IPR017441 GO:0005524
Stsc211716g00004 799 SMART serkin_6 475 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211716g00004 799 ProSiteProfiles Protein kinase domain profile. 475 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211716g00004 799 FunFam serine/threonine-protein kinase PBS1-like 450 549 - -
Stsc211716g00004 799 Gene3D Transferase(Phosphotransferase) domain 1 550 754 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211716g00004 Stsc-Chr211716 24270 35556 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211716g00004 414 784 Receptor kinase-like Gene Family AT4G18250 44.271 2.24e-100 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc211716g00004 Pkinase 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211716g00004 - - lja:Lj0g3v0275229.4 903.664