Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211710g00002 ATGAATCTTTCAAAGTGTTGTTGCAAGTGTGAAGTTGTTCTGTTCTTGTGGTTGTGCTGCTATTTGCTATTGGCTACTGCTCAGAATAATGGAGTCACTCACCCCAATGAAGTTAAGGCGTTGAGAAGCATAAAGAACAGTTTGATTGATATGAATAGAAATTTGAGCAATTGGAATCGAGGAGATCCATGTATCAATAGATGGACAGGGGTTTTGTGTCATAACAGAAGATTAGCCGATGGATATTTTCATGTTCGGGAATTGCAACTACTGAGAATGAATTTGTCAGGAAAATTGGCACCAGAGATTGGCAACTTATCTTATCTGGAGATATTGGATTTTATGTGGAACAACATAAGTGGGACTATACCAAAAGAAATCGGCAATATCAATACCCTCAGACTCTTGCTCCTGAATGGAAATAATTTAATTGGTCCACTTCCAGAAGAGCTTGGATATCTACCAAACTTGACCAGATTCCAAATTGATCAGAACAATATCAATGGATCCATACCTTCATCATTTGCAAACCTCAATGCCTGCTTACACTTTCACATGAACAACAATTCACTTAGCGGCCCGATCCCGCCGGAGCTTTCCCGATTACCAAACCTTATTCACATGCTTCTTGACACAAACAACTTAACAGGAACTCTTCCTCCTGAGCTCTCCAAGATGCCAAGATTAAAGATTCTGCAGTTTGATAACAATAACTTCAGTGGAAGTACTATTCCTGAGTCTTATGCAGACATGTCACATTTGTTAAAACTGAGTCTTAGGAACTGCAACTTGCAAGGACCAATTCCTGATCTGAGCAGAATACCAAACCTTTATTATATTGATCTCAGTGACAATCAGCTCAATGAAACAATTCCTACAAATCAGCTTTCTGGGAATATCACAACCATTGTCTTATCAAACAACAAGCTCACTGGAACTATTCCATTAAACTTTTCAAATCTTCCACGTCTTAAGAAATTGTCTATTGCAAACAATAAACTGAGTGGCAGTGTTTATTCCTCTATTTGGCAGAACAAGACTACAAGTTCAAATGAAAGCCTTATTGTGGACTTGCAAAATAATCAGCTCAACAACATATCAGGAAGTACTACTCTTCCTTCAAATGTCACACTCCAGCTTGGGGGAAATCCTCTATGCTCAAATAACAGCTATTCTAAATTCTGTGGATCACAAAATGTAAACGGCGGGAACGGTAGCTCTGGCTTTAACTGTCCCGGTGAACCATGCTCCTATCCTTATGAGTACTCTTCAGACTGTGTCTGTGCAGCTCCATTGTATGTTGATTACAGATTGAAAAGTCCAGGATTTGAATCAGATTTCCCTGCTTTTATGAGTAACTTCCAAACTTACTTCACCAATGGATTGAACATTGAGACTAATCAGCTCTACATCAATGATTATCATTGGGAAGAAGGCCCGCGGCTGCGGATGAACTTGAAGGTTTTCCCTTCAACTGTTGACAACACAACTAATCAGAAGTTCAATGACAGCGAGTATTCTCGGATTAGAAGCAAGTTGACAGGGTGGAATGTTAGTGACAGTGACTTGTTTGGGCCTTATGAACTTATGAATCTTCCTCCTTATACTCAGGGTTCAATTGCAGTAGCAGTTACATTATCTGCAATTGTTTCCCTTCTTATACTGAGATTCAGATTGAAAGATTATCGTGTGCTTTCGAAACGGCGCCCTGGTGGATCAAAGATCTCAATCAAAATTGAAGGTGTGAGGGTGTTTGTTTTCGAGGAATTGGTGGCGGCGACTAATAATTTCAGTGAGTCTTCTGAAGTTGGACGCGGCGGGTATGGGAAGGTTTATAAAGGTATTCTTGCTGATGGCACTGCTGTAGCCATAAAACGTGCACAGGAAGGATCACTGCAAGGTGAGAGGGAGTTCCTTACAGAAATACAGTTGCTTTCACGGCTGCATCACCGAAACCTTGTGTCTCTAGTTGGATATTGTGATGAAGAGGGTGAACAGATGCTGGTTTATGAATATATGCCGAACGGAACTCTAAGGGATCACCTCTCGCCTTATTCAAGAGAACCTCTGAGTTTTACCATGAGAATGAAGATTGCTCTAGGATCAGCTAAAGGTCTTTTGTATCTACACACAGAAGCTGATCCTCCAATTTTCCACAGAGATGTCAAGGCCAGTAATATACTATTGGACTCTAAGTACAATGCAAAAGTTGCTGATTTTGGACTTTCGCGACTTGCCCCGGTTCCAGATGTCGAAGGAGTTGTGCCTGGTCATGTATCTACGGTGGTAAAAGGGACCCCGGTTACTGTGGATTACCAATCTGGCGGTCTAGCTTCAGTTATCGACGAACGCGTGGGGCATTATCCTTCCGAATGTGTGGAACCATTTTTTACATTGGCTCTGAAGTGTTGCGAAGATGCGCCAGAAGGAAGGCCTAAGATGGCAGAAGTGGTTAGAGAGCTTGAAAACATTTGGTCCCTGATTCCTGAGTCTAATGGCAAAGTAGCTGAATATGTTAGCAGTGATTCAGGAGCATTATTCAGTTCAGAACCTTCATCATCCACCATAAAAAACCCTTTTGCATCCTTAGATATTTCTGGCAGTGATCTTGTTAGTGGAGATATTCCAAGCATCAAGCCAAGATAA 2646 0.4119 MNLSKCCCKCEVVLFLWLCCYLLLATAQNNGVTHPNEVKALRSIKNSLIDMNRNLSNWNRGDPCINRWTGVLCHNRRLADGYFHVRELQLLRMNLSGKLAPEIGNLSYLEILDFMWNNISGTIPKEIGNINTLRLLLLNGNNLIGPLPEELGYLPNLTRFQIDQNNINGSIPSSFANLNACLHFHMNNNSLSGPIPPELSRLPNLIHMLLDTNNLTGTLPPELSKMPRLKILQFDNNNFSGSTIPESYADMSHLLKLSLRNCNLQGPIPDLSRIPNLYYIDLSDNQLNETIPTNQLSGNITTIVLSNNKLTGTIPLNFSNLPRLKKLSIANNKLSGSVYSSIWQNKTTSSNESLIVDLQNNQLNNISGSTTLPSNVTLQLGGNPLCSNNSYSKFCGSQNVNGGNGSSGFNCPGEPCSYPYEYSSDCVCAAPLYVDYRLKSPGFESDFPAFMSNFQTYFTNGLNIETNQLYINDYHWEEGPRLRMNLKVFPSTVDNTTNQKFNDSEYSRIRSKLTGWNVSDSDLFGPYELMNLPPYTQGSIAVAVTLSAIVSLLILRFRLKDYRVLSKRRPGGSKISIKIEGVRVFVFEELVAATNNFSESSEVGRGGYGKVYKGILADGTAVAIKRAQEGSLQGEREFLTEIQLLSRLHHRNLVSLVGYCDEEGEQMLVYEYMPNGTLRDHLSPYSREPLSFTMRMKIALGSAKGLLYLHTEADPPIFHRDVKASNILLDSKYNAKVADFGLSRLAPVPDVEGVVPGHVSTVVKGTPVTVDYQSGGLASVIDERVGHYPSECVEPFFTLALKCCEDAPEGRPKMAEVVRELENIWSLIPESNGKVAEYVSSDSGALFSSEPSSSTIKNPFASLDISGSDLVSGDIPSIKPR 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211710g00002 881 Gene3D Phosphorylase Kinase; domain 1 570 672 - -
Stsc211710g00002 881 Gene3D Transferase(Phosphotransferase) domain 1 772 834 - -
Stsc211710g00002 881 Gene3D Transferase(Phosphotransferase) domain 1 673 771 - -
Stsc211710g00002 881 Pfam Protein tyrosine and serine/threonine kinase 600 745 IPR001245 GO:0004672|GO:0006468
Stsc211710g00002 881 SUPERFAMILY Protein kinase-like (PK-like) 574 826 IPR011009 -
Stsc211710g00002 881 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 35 196 - -
Stsc211710g00002 881 PANTHER RECEPTOR-LIKE PROTEIN 55 44 824 - -
Stsc211710g00002 881 SMART serkin_6 597 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211710g00002 881 Gene3D Ribonuclease Inhibitor 299 399 IPR032675 -
Stsc211710g00002 881 FunFam Leucine-rich repeat protein kinase family protein 563 672 - -
Stsc211710g00002 881 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Stsc211710g00002 881 Gene3D Ribonuclease Inhibitor 32 298 IPR032675 -
Stsc211710g00002 881 ProSitePatterns Protein kinases ATP-binding region signature. 603 625 IPR017441 GO:0005524
Stsc211710g00002 881 ProSiteProfiles Protein kinase domain profile. 597 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211710g00002 881 SUPERFAMILY L domain-like 47 395 - -
Stsc211710g00002 881 ProSitePatterns Serine/Threonine protein kinases active-site signature. 717 729 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211710g00002 Stsc-Chr211710 12457 19650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211710g00002 13 835 Receptor kinase-like Gene Family AT5G01950 52.818 0.0 849
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Stsc211710g00002 PK_Tyr_Ser-Thr 1.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211710g00002 - - gmx:100786467 1131.7