Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211710g00001 ATGGCAAAGGGTTGCACAAACAATGATTATGAAGAGGCTAGGAAACAAAGGCTAGAAGAAAACAAGAAGCGCTTTGAGGATTTGGGAATTTCAACGATTTCGAAGAACTTGTCGGAAATTGCGAGTTCTGTCAAGAAGTCTCCGCATCGTTCTCCTAAACCAAAATCTAAGAGTGATGTTGTGGTGGAACCAAGGCGATCTTCTCGTGTACGTAACCCAGTTACATACTCTGAAGATGTTGGCATAGAACTTCCAACTTTTCGGAAGAGGTCAAGGTCAAGTTCATCATGGGGAAGTTATATTGCAAGGCCTCTACATGAAATCAAAGAAGCTACAAATGAACAAAGAGCTCAAGCTTTGGAGGCCGCGGAGAAACTCCAAAGCAATTTGCAGTCTGAAAATCCATCATTTATTAAGTCGATGCTCCGGTCTCATGTTTATAGTTGCTTTTGGTTGGGTCTTCCTTTGAGATTTTGTGCAAAACATCTCCCAAAAACTGTATGTAACATGATTTTAGAGGATGAAGCTGGTAAAGAATATGATGCTGTTTTCATTGGCAATAGAAGTGGACTTAGTGGTGGCTGGAGAGGATTTGCATTAGAGCATAAGCTTGATGATGGTGATGCACTTGTTTTTGAATTGACTGAAAAAACAAGATTTAAGGTTTATAGAATTAGAGCATTTCCAGATTCAGCTGAAGAAGATGAAAAGCAGAATTTGAAGGAAGAAGGGAATAAACGTGTGAAAAAAGCAGCAAAAGCTAATAGCAATTCCGAATCAGAATCCAACAAGACGAAAAAGGGCATTGCACATAAAACTGATGAAGTAGAGTGTTCCAAGAATAACTTGCCAGAAAGTAACGTTGACGTTGAAGCTAAACCACCGGAGGTGAAGCTGAGTTATAGAACTAGGTTTACTCGGAAGAAAGTGCAAGATAAATCTAAAGGAGCAGAACAAGTTGAAATGGGAGAACCAAAGGAAGCCATGAAGCCTAAATCTCAAGGAAACAAGACAAAAAAGTCAAAAGAAAGTATTGTTCAGGAAATCGATAACTCAGACAATGCTCAACAGATTCTTTCCGAAAATGATCCCGTCGAACCAAAAGGTGCGAGCCAAAGCAATGAAAAACGGATTGTTCAAGATGGGGGACCAGTCAAAAAAAGCAAAAGTGTTTCAAAACCTAGAAAAAAGCCAGCTTTAAAGCTTTTCAGGAAGAGGGTATAG 1224 0.3954 MAKGCTNNDYEEARKQRLEENKKRFEDLGISTISKNLSEIASSVKKSPHRSPKPKSKSDVVVEPRRSSRVRNPVTYSEDVGIELPTFRKRSRSSSSWGSYIARPLHEIKEATNEQRAQALEAAEKLQSNLQSENPSFIKSMLRSHVYSCFWLGLPLRFCAKHLPKTVCNMILEDEAGKEYDAVFIGNRSGLSGGWRGFALEHKLDDGDALVFELTEKTRFKVYRIRAFPDSAEEDEKQNLKEEGNKRVKKAAKANSNSESESNKTKKGIAHKTDEVECSKNNLPESNVDVEAKPPEVKLSYRTRFTRKKVQDKSKGAEQVEMGEPKEAMKPKSQGNKTKKSKESIVQEIDNSDNAQQILSENDPVEPKGASQSNEKRIVQDGGPVKKSKSVSKPRKKPALKLFRKRV 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211710g00001 407 Gene3D - 111 228 IPR015300 -
Stsc211710g00001 407 MobiDBLite consensus disorder prediction 291 347 - -
Stsc211710g00001 407 Coils Coil 109 129 - -
Stsc211710g00001 407 MobiDBLite consensus disorder prediction 264 279 - -
Stsc211710g00001 407 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 45 227 IPR044837 -
Stsc211710g00001 407 MobiDBLite consensus disorder prediction 233 254 - -
Stsc211710g00001 407 SMART B3_2 137 231 IPR003340 GO:0003677
Stsc211710g00001 407 MobiDBLite consensus disorder prediction 233 407 - -
Stsc211710g00001 407 Coils Coil 8 28 - -
Stsc211710g00001 407 CDD B3_DNA 135 223 IPR003340 GO:0003677
Stsc211710g00001 407 SUPERFAMILY DNA-binding pseudobarrel domain 130 226 IPR015300 -
Stsc211710g00001 407 Pfam B3 DNA binding domain 137 222 IPR003340 GO:0003677
Stsc211710g00001 407 ProSiteProfiles B3 DNA-binding domain profile. 137 228 IPR003340 GO:0003677
Stsc211710g00001 407 MobiDBLite consensus disorder prediction 40 71 - -
Stsc211710g00001 407 MobiDBLite consensus disorder prediction 389 407 - -
Stsc211710g00001 407 MobiDBLite consensus disorder prediction 348 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211710g00001 Stsc-Chr211710 5626 11726 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211710g00001 10 223 B3 DNA Binding Superfamily AT5G58280 51.230 5.94e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc211710g00001 B3 7.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211710g00001 - - adu:107458051 641.343