Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211709g00010 ATGGTGGGTTGTAACAACAATACAAGGCAACAAAATGATACAAATTCTACCAAAATATTTGTTGGAGGGTTGGCTTGGGAGACTCAAAAGGAGACACTGAGAAGATATTTTGAGGAATTTGGAGATATTTTAGAGGCTGTTGTCATAACAGACAAGAACACTGGAAGGTCCAAGGGTTATGGCTTTAATTGTTATCCTATCTATGGAGGTCAACAATTTCCACCATACTACCCTTCCAATAATGGGGCAGCAGGGCCATTATTAGGGTTGATCCCTAATATTAATCACCCTTTGAATGCTCAATATGCACATAGATATCATAGTCATCATCAAGGTCATGGTTTTGGAGTTAAATTTCCACCACATATGATGCAAATTCCAATTCTACCTGCAAGACAATATGGATCACCTGGTATCTTGAATTTTCCTTCTTCAATGCCAATACCACCAATTACTAATGCAGGTGATAAATTATTATACGCATTATTGTCGGTGTAA 498 0.3755 MVGCNNNTRQQNDTNSTKIFVGGLAWETQKETLRRYFEEFGDILEAVVITDKNTGRSKGYGFNCYPIYGGQQFPPYYPSNNGAAGPLLGLIPNINHPLNAQYAHRYHSHHQGHGFGVKFPPHMMQIPILPARQYGSPGILNFPSSMPIPPITNAGDKLLYALLSV 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211709g00010 165 SUPERFAMILY RNA-binding domain, RBD 8 62 IPR035979 GO:0003676
Stsc211709g00010 165 PANTHER BOULE-RELATED 11 62 - -
Stsc211709g00010 165 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 62 IPR000504 GO:0003723
Stsc211709g00010 165 Gene3D - 3 66 IPR012677 -
Stsc211709g00010 165 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 62 IPR000504 GO:0003723
Stsc211709g00010 165 SMART rrm1_1 18 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211709g00010 Stsc-Chr211709 38739 41279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211709g00010 13 62 C2H2 Transcription Factor Family AT2G19380 50.000 3.52e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211709g00010 - - adu:107473081 145.591