Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211707g00004 ATGGCGCGAAAGGCTAAACGGAAATCCTCTGCTTCTGCCTCACCCTCTTCCTCTGTTCCCTCTCGCAAACTAGTGCTCTGCAGTAAAACAAGCAAGGAGATGAAGAGATCGCTGCGGCAGACTATTTCGAGAAAGAAACCTAAAGCAAAGCAAAAGATTGATGCCAAGAAGCCAAAGAAACCCCCCACTGCGTTCTTCTACTTCTTTCCTCTGTCATTCTTAAGGGAGGATTTTCGTAAAGAATTTCAAGAGCAGAACCCAGATGTCAAGTCAATGCGAGATATTGGCAAGGCTTGCGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTACGATATAGCAACGCAAAAACGCGCAGAATTTGATATGGCAATGGCAGAATATAATAAGAAAATGGAAAATGGTGAATTTGAAGAAACTGATGAAGAATCGGATTTTGATGAATAA 459 0.4205 MARKAKRKSSASASPSSSVPSRKLVLCSKTSKEMKRSLRQTISRKKPKAKQKIDAKKPKKPPTAFFYFFPLSFLREDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATQKRAEFDMAMAEYNKKMENGEFEETDEESDFDE 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211707g00004 152 MobiDBLite consensus disorder prediction 1 58 - -
Stsc211707g00004 152 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 58 133 IPR009071 -
Stsc211707g00004 152 SUPERFAMILY HMG-box 42 135 IPR036910 -
Stsc211707g00004 152 MobiDBLite consensus disorder prediction 9 25 - -
Stsc211707g00004 152 MobiDBLite consensus disorder prediction 41 55 - -
Stsc211707g00004 152 Gene3D High mobility group box domain 41 148 IPR036910 -
Stsc211707g00004 152 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 32 149 IPR031061 -
Stsc211707g00004 152 SMART hmgende2 57 134 IPR009071 -
Stsc211707g00004 152 Pfam HMG (high mobility group) box 58 133 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211707g00004 Stsc-Chr211707 36930 39533 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Stsc211707g00004 HMG_box 1.3e-12 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211707g00004 - - gmx:100809401 159.073