Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211707g00002 ATGGAGGTTGGTGGTAAGAAGATCATCAAGAGAAACAAAGGGAAACAAAAGAGAGAAATGATAATGATTCATAATAAGAAGAGTTGTCAAATTGCTTTTGCAAAGAGAAAAGATGGCATCATGAAGAAAGCTAACGAAGTAAGGGCTTTGTGTGGTGCCATTGTTGACGTGATCATGTATTCCCCAACCGGGAAGGCATATTTCTACGGCGATACTTCAATGAAAACGATAAAAATTGCTCTCTCAAACGAGCAAGAATCTAACGAGGAAGGTGAAGATCACTTCCTGAGTCACATCTTGGACGAAATGTCCAAGGTGGAAATGCAAGATCTGATTGCGAATAGCGATTCACTTGTGGATCAATTGAATGATGAGAAAGAACGAGATCAAACCCTTTCTAGGGTTTTGAATTTCATTGATGGTGAAAGTAGTTATGAAAACAACAAAGAGGCAGAGAAAGAACTTTTGGTTCTTCAAAAGCTCTTGAAGGACCGAATTTCAATCAATGCAACTGCGGCTTCTACTTCTCATCATCATGGTGTGGATCAAACCATGGTTCAACTCAATACTGGAATTATTGGATCATACCCTCCTCATGCCAACCCTTTTGACACCACGAGAGGAATTGGTGACCATAATGCCCCTGTCTGGTATCCTTCAGATCAACACCAACAAGGATTTAATGGTCCATTTTTCTACAATGCTAGTAACGGAAATGGCGGAGGAGGAGGCGGCGGGGGTGACAGCGGCAGTGGCAGTGGAAGTCATGTTTACAGTTCAAATTATTATAACAATAATAATACCGAGGGAGGCATTTTTGGTTTTCCAAACGAGAACATTAATAATCCATTTAACAATGGTGGTTATGGCGGCGGAGGGTTCTTCTAA 888 0.4099 MEVGGKKIIKRNKGKQKREMIMIHNKKSCQIAFAKRKDGIMKKANEVRALCGAIVDVIMYSPTGKAYFYGDTSMKTIKIALSNEQESNEEGEDHFLSHILDEMSKVEMQDLIANSDSLVDQLNDEKERDQTLSRVLNFIDGESSYENNKEAEKELLVLQKLLKDRISINATAASTSHHHGVDQTMVQLNTGIIGSYPPHANPFDTTRGIGDHNAPVWYPSDQHQQGFNGPFFYNASNGNGGGGGGGGDSGSGSGSHVYSSNYYNNNNTEGGIFGFPNENINNPFNNGGYGGGGFF 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211707g00002 295 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 145 - -
Stsc211707g00002 295 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Stsc211707g00002 295 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 69 IPR002100 GO:0003677|GO:0046983
Stsc211707g00002 295 Coils Coil 108 128 - -
Stsc211707g00002 295 Gene3D - 25 93 IPR036879 GO:0003677|GO:0046983
Stsc211707g00002 295 SUPERFAMILY SRF-like 14 77 IPR036879 GO:0003677|GO:0046983
Stsc211707g00002 295 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Stsc211707g00002 295 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Stsc211707g00002 295 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Stsc211707g00002 295 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211707g00002 Stsc-Chr211707 8520 10389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211707g00002 8 135 Type I MADS-box Gene Family AT5G60440 28.125 8.48e-14 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc211707g00002 SRF-TF 3.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211707g00002 - K09264 ahf:112762769 234.572