Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211706g00006 ATGCAAAAGGAAAAGGAAGCAATCATCACCAATAATAAGGAGGGGAGTAATAATAATAATAAGAAGGAGATAGAAATAATGGAAGGTGGGCATGGTGGTGATGGAAAGGAGGAAACCCTACCGCCGGGTTTCCGATTTCATCCGACCGATGAAGAACTCATCACTTGCTATCTCATAAACAAGATCTCGGATTCAAACTTCACCGGCAGGGCTATAACTGACGTAGATCTCAACAAATGTGAGCCATGGGAGCTCCCAGGGAAGGCGAAGATGGGAGAGAAAGAATGGTACTTCTTCAGCCTGAGGGACCGTAAGTACCCGACCGGGGTTCGGACGAACCGAGCCACGAACACCGGGTACTGGAAGACCACCGGAAAAGACAAAGAGATCCTTAATAGTGTTACATCGGATCTGGTTGGGATGAAGAAGACTTTGGTTTTCTACAAAGGAAGAGCTCCGAGAGGAGAGAAGAGTAACTGGGTCATGCATGAATATCGCATTCATTCTAAATCCGCTTTTCGAACTAGCAAGCAAGATGAATGGGTGGTTTGCCGAGTGTTCCAGAAGAGTGCTGGGGTAAAGAAGTACCCTTCTTCCAACCATGCAAGTAGGGCAATGAACCCTTTCAACCTTGAAATAGGTCACCACAACATTGTGCCGCCGCCGCCCATGATGCAGCTCGGAGACCCTACGACCGCTCATTTCCTCTACGGAAGGAACTACATGAACACTGCAGAGCTAGCAGAAGTAGCTAGGGTTTTGCGTGGTGGTACTGGATCAACCAGTACTATTAACCCTCCCCCGATGCAGTCTCAGATGAACTATCCAATAACCGCATCAGGAGCCGGTTTTACAATTTCAGGGCTCAATTTAAATTTAGGGGGCGGAGGAGCCGGAACAGCATCGGGCACAACACAACCAGTCTTGCGACAAATGCAGCCGACTCCTCCGTCGCAAACAATGGGTATGGTTTCTCATCATCACCAAGTTCATCATGATGTGAGTTCCAACATGATTTCAACAAATTCTCTTGGTGCTGAGAATGTGGGTTATGTCACTGAAATAAGCAACACAAATGGTGGTCATGGAAATAGGTATTTGGGAATGGATCATTGCATGGATCTTGATAATTACTGGCCTTCCTACTGA 1149 0.47 MQKEKEAIITNNKEGSNNNNKKEIEIMEGGHGGDGKEETLPPGFRFHPTDEELITCYLINKISDSNFTGRAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSVTSDLVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSAFRTSKQDEWVVCRVFQKSAGVKKYPSSNHASRAMNPFNLEIGHHNIVPPPPMMQLGDPTTAHFLYGRNYMNTAELAEVARVLRGGTGSTSTINPPPMQSQMNYPITASGAGFTISGLNLNLGGGGAGTASGTTQPVLRQMQPTPPSQTMGMVSHHHQVHHDVSSNMISTNSLGAENVGYVTEISNTNGGHGNRYLGMDHCMDLDNYWPSY 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211706g00006 382 MobiDBLite consensus disorder prediction 1 20 - -
Stsc211706g00006 382 FunFam NAC domain-containing protein 100-like 49 193 - -
Stsc211706g00006 382 Pfam No apical meristem (NAM) protein 41 167 IPR003441 GO:0003677|GO:0006355
Stsc211706g00006 382 SUPERFAMILY NAC domain 38 189 IPR036093 GO:0003677|GO:0006355
Stsc211706g00006 382 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 37 305 - -
Stsc211706g00006 382 Gene3D NAC domain 49 193 IPR036093 GO:0003677|GO:0006355
Stsc211706g00006 382 ProSiteProfiles NAC domain profile. 40 189 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211706g00006 Stsc-Chr211706 45863 49824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211706g00006 28 382 NAC Transcription Factor Family AT2G24430 51.630 1.67e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc211706g00006 NAM 7.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211706g00006 - - gmx:100804931 520.005