Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211706g00002 ATGGTAGCTGTGGAAACTAATCGCGTGATGGAAAGGGAGCGAACTCGTAAACGCCCTCGTCTCACGTGGGACGTGCTTCCACCACCACCACCAGCACCGTCCCAGCAGGCTGAAAGAGGTGTGGTTGATGAAGGAATCGAAAAGAAGCACGCCTCGCCTCCAAGAAGGGATGACGATCGTGAAGGCCATTATGTCTTCAATCTTGGCGAGAATCTCACTCCTAGATATAAAATCCTCAGCAAGATGGGTGAAGGCACATTTGGTCGAGTTTTGGAATGTTGGGATCGCCAAGCCAGAGAGTACGTTGCTGTCAAGGTGATTAGGAGCATTCGGAAATACCGCGATGCAGCAATGCTTGAAATTGATGTGCTTCAACGTCTGTCTAAGGGTGAAATAGGAATCTCACGCTGTGTGCAGATCCGGAATTGGTTTGATTACCGAAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGACCTTGTTCGGGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGAACTACATCTAATCCACACTGACCTGAAGCCAGAAAATATACTTCTTGTTTCTTCTGAATATAGGATTACCTCAGGTGAAATGCAATTCAGATGCTTGCCCAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCTTTTGATCATCAGATTCATAACTCAATTGTTTCTACAAGGCATTACAGAGCCCCTGAGATCATTCTAGGTATAGGGTGGTCCTACCCTTGTGATTTGTGGAGTGTGGGTTGTATTCTTATCGAACTATTAACTGGTGAAGCATTGTTTCAAACTCATGAAAACTTGGAACACCTGGCAATGATGGAGAGAGTGTTGGGACCTATGCCAGAGCACATGGCCCGAAAGTCCACCCGAGGAGCAGAGAAGTATTTCAGGCGTGGAGCACGACTGAACTGGCCCGAAGGAGCTGTTTCAAGGGAAAGCATCCGTGCTGTTAAGAAGCTCGAACTTCTCGAGGATCTTGTATCAAGCCGTGTGGATTCTTCAAGATCATCATTAACTGATTTGTTACATGGATTATTGACTTATGATCCAAATGAACGTCTAACATCTAGACAAGCCCTTGATCATCCCTTCTTTAGAAATCCAACTTAA 1197 0.4453 MVAVETNRVMERERTRKRPRLTWDVLPPPPPAPSQQAERGVVDEGIEKKHASPPRRDDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQAREYVAVKVIRSIRKYRDAAMLEIDVLQRLSKGEIGISRCVQIRNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHELHLIHTDLKPENILLVSSEYRITSGEMQFRCLPKSSAIKLIDFGSTAFDHQIHNSIVSTRHYRAPEIILGIGWSYPCDLWSVGCILIELLTGEALFQTHENLEHLAMMERVLGPMPEHMARKSTRGAEKYFRRGARLNWPEGAVSRESIRAVKKLELLEDLVSSRVDSSRSSLTDLLHGLLTYDPNERLTSRQALDHPFFRNPT 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211706g00002 398 Pfam Protein kinase domain 76 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211706g00002 398 SUPERFAMILY Protein kinase-like (PK-like) 63 396 IPR011009 -
Stsc211706g00002 398 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 36 396 - -
Stsc211706g00002 398 MobiDBLite consensus disorder prediction 41 62 - -
Stsc211706g00002 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Stsc211706g00002 398 Gene3D Phosphorylase Kinase; domain 1 63 156 - -
Stsc211706g00002 398 FunFam Serine/threonine-protein kinase AFC2 63 156 - -
Stsc211706g00002 398 SMART serkin_6 76 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211706g00002 398 FunFam Serine/threonine-protein kinase AFC2 152 394 - -
Stsc211706g00002 398 MobiDBLite consensus disorder prediction 1 62 - -
Stsc211706g00002 398 Gene3D Transferase(Phosphotransferase) domain 1 130 394 - -
Stsc211706g00002 398 ProSiteProfiles Protein kinase domain profile. 76 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211706g00002 398 CDD PKc_CLK 63 394 - -
Stsc211706g00002 398 MobiDBLite consensus disorder prediction 7 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211706g00002 Stsc-Chr211706 14490 18543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211706g00002 75 394 Core Cell Cycle Gene Families AT3G54180 28.955 6.68e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Stsc211706g00002 Pkinase 8.1e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211706g00002 K08287 - gmx:100782453 657.136