Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211705g00009 ATGGAGCAGTATGAAATTCTAGAACAGATTGGCAAAGGTGCCTTTGGTTCTGCTCTTCTTGTCAACCACAAGCATGAAAAGAAAAAATATGTCCTCAAGAAGATTCGCCTTGCTCGCCAGACTGACAGAGCCCGTAGATCTGCCCACCAGGAGATGGAGCTTATATCTAAAGTTCATAATCCATTTATAGTGGAGTATAAAGATTCCTGGGTAGAAAGGGGTTGTTTTGTATGTATTGTCATAAATTATTGTGAAGGAGGAGATATGGCTGAAGCTATAAAAAAGGCTAATGGTGTTTATTTTCCTGAAGAGAAACTTTGTAAGTGGCTTGTTCAACTGCTGATGGCACTTGATTACTTGCATGTAAATCATATACTTCATAGAGACGTCAAGTGCTCCAATATATTCTTGACGAAAGATCGGGACATCCGTCTAGGTGACTTTGGTCTTGCTAAGATGTTGACATCTGATGATCTTGCTTCCTCAGTTGTTGGGACCCCAACTTATATGTGTCCTGAGCTTCTTGCTGACATACCCTATGGTTCTAAGTCAGACATCTGGTCTTTGGGATGCTGTATTTATGAAATGGCTGCACACAAGCCAGCTTTTAAAGCTTTTGATATACAAGCATTGATTAACAAAATAAACAAGTCTATAGTGTCTCCACTTCCAACTATGTACTCTAGTGCTTTCCGAGGGCTTGTGAAGAGCATGCTGCGGAAAAATCCAGAGCTTAGGCCAACTGCTGGTGAGTTACTGAATCATCCACATCTTCAGCCTTACATTCATAAAATTCAGCTACAACTAAGTAGCCCCAGGAGAAGTAGTACTTTCGCATTTCAATGGCCTGAGAAAAGCTATGCAAGGAGAAGTAGGTTCATAGAGCCGGAATCTGTTTCTTCTCTTTCTGGCAAAGACAAATGCTTGTCATTAAGCAATGACAACAGCAGGTTCTTGAATCCAAGTGTTTCTGGAACTGATGAACTACAAGGATCTCAGTGTTCTTCTACTCAAAGAGCAATTGGATCATCATCCAGTTATTCAAAAGAGAAGCTCGATGAGCTATCTGTTGCCTTTGTCCACGACAAATGCAATACTTATAAATCATCAAAAGCTAGAAAGTCCTCAATTGTTCAGAGACCTTCAAGACTGAGAACTGCTAAGGATTTTGCCACATCAAGAGGCCAGAAAATGACACCTTCTAGGACAGAACATATCAGTTCAAAGCGCGTTTCACACCCAATGCCTAATGCACCAACTCGTAGAGCATCCATTCCACCACCAACTAAAGCGAACGTTGGCCTTCTCCAGTGTGTGGAGTCTCCTGATGTCTCGGTTAACGCTCCGAGAATCGATAAGATTGCAGAGTTCCCTCTGCCCTCATATGAGGATCATTTCTTCGCTGCCAAAGTACCATCACCATCACCATCACCAACATCAACCACCAGCGAGGAAAAGTGCATGATTCAGGTTGTGGACAAAGCAACTGTCCAAAACACTAACAGTGAACAATCTGCTGATCATAAGCATCGATTCGACACCTCGTCGTTGCAGCAACGGGCAGAGGCATTGGAAGGGCTGCTAGAGTTCAGTGCAAGGCTGCTCCAACAACACAGGTTTGATGAACTTGGAGTGTTGCTCAAGCCATTTGGGCCTGAGAAGGTTTCTCCAAGGGAAACAGCTATTTGGTTGGCCAAAAGCTTCAAAGAAACTCTTCTATAA 1722 0.428 MEQYEILEQIGKGAFGSALLVNHKHEKKKYVLKKIRLARQTDRARRSAHQEMELISKVHNPFIVEYKDSWVERGCFVCIVINYCEGGDMAEAIKKANGVYFPEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPTYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKAFDIQALINKINKSIVSPLPTMYSSAFRGLVKSMLRKNPELRPTAGELLNHPHLQPYIHKIQLQLSSPRRSSTFAFQWPEKSYARRSRFIEPESVSSLSGKDKCLSLSNDNSRFLNPSVSGTDELQGSQCSSTQRAIGSSSSYSKEKLDELSVAFVHDKCNTYKSSKARKSSIVQRPSRLRTAKDFATSRGQKMTPSRTEHISSKRVSHPMPNAPTRRASIPPPTKANVGLLQCVESPDVSVNAPRIDKIAEFPLPSYEDHFFAAKVPSPSPSPTSTTSEEKCMIQVVDKATVQNTNSEQSADHKHRFDTSSLQQRAEALEGLLEFSARLLQQHRFDELGVLLKPFGPEKVSPRETAIWLAKSFKETLL 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211705g00009 573 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Stsc211705g00009 573 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 529 - -
Stsc211705g00009 573 FunFam Serine/threonine-protein kinase Nek3 86 328 - -
Stsc211705g00009 573 MobiDBLite consensus disorder prediction 321 346 - -
Stsc211705g00009 573 MobiDBLite consensus disorder prediction 388 428 - -
Stsc211705g00009 573 SUPERFAMILY Protein kinase-like (PK-like) 1 313 IPR011009 -
Stsc211705g00009 573 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211705g00009 573 Gene3D Transferase(Phosphotransferase) domain 1 79 289 - -
Stsc211705g00009 573 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211705g00009 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Stsc211705g00009 573 Gene3D Phosphorylase Kinase; domain 1 1 78 - -
Stsc211705g00009 573 CDD STKc_Nek 3 258 - -
Stsc211705g00009 573 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Stsc211705g00009 573 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211705g00009 Stsc-Chr211705 47892 51363 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211705g00009 10 259 MAP Kinase Kinase Kinase AT1G53570 32.157 1.91e-37 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Stsc211705g00009 Pkinase 7.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211705g00009 K08857 - gmx:100810347 792.341