Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211705g00004 ATGAACTATCTGTACCCGGTGAAAGAAGAGTACCTGGAGGAACCATCGTCGTCGTCCTCATTTCCGGTGGGAATTAGAAATGAGGAGACGATGAGGATGGTTCCTCCGCCGCAGCCAATGGAGGGGCTCCACGAAGCGGGGCCACCTCCATTCCTGACGAAGACGTTCGACGCCGTGGAGGATCCAGCCACAGACCACGTAGTGTCGTGGAGCCGAAGCGGCGCAAGCTTCGTGGTTTGGGATCCGCACGCCTTCTCGCGTGGTCTGCTTCCGAGATATTTCAAGCATAACAACTTCTCCAGCTTCGTAAGGCAGCTCAATACTTACGGTTTTAGAAAGATTGATCCAGATAAATGGGAATTTGCAAATGAAGGGTTTGTGAGAGGCCACAGACACCTATTAACCACTATAAGGAGGAGGAAGGCACCGGCGCAGCCTCCGCCGCCGCCCATCCAAACGCAAGGTTCACAGTCGTCGCAGCAGGGTCACTGCCTCGAAGTAGGGCGGTTCGGATTGGACCAAGAGATCGATCGGTTGAGGCGCGACAAGCAGGTGTTGATGATGGAGCTTGTGAGGCTTAGACAGCAGCATCAAACAACTAGATCATATCTTGAGACGATGGAGCAAAGGCTGAAAGCTACTGAGATGAAGCAGCAACAGATGATGGCCTTCTTGGCCAAAGCTATGAAGAACCCCATGTTTATACAGCAACTCATACAGCAAAAGGAGAAGAGGAAGGAGCTCGAGGATGCCATCACCAAGAAGAGGAGGAGGCCCATTGAGCAAGGGCCTAGTTGCAGCACTACTGTCAAGGTTGAGAATCCACCAGAGTTTGCTGGATATGGTGGTAGTGAGTTTGGGGTTTCTGAGCTTCAAGTTCTGGCTTTGGAGATGCAAGGTTATGGTAGAGGAGGGAGGAGAGAATGTGAGCATGATGATGAGCAAGAACAAGAGAGGCTTGACAAGGAGCTTGATGATGAAGGCTTCTGGGAAGAGTTGTTCAGTGAGCATTATGATGAGGGCGAAATGGACATTTCACAAGAAGATGAAGAAGAGGATGTCAATGTCTTGGCAAATCGGATGGGTTACTTGGGCTCAACTCCTAAGTGA 1110 0.509 MNYLYPVKEEYLEEPSSSSSFPVGIRNEETMRMVPPPQPMEGLHEAGPPPFLTKTFDAVEDPATDHVVSWSRSGASFVVWDPHAFSRGLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFVRGHRHLLTTIRRRKAPAQPPPPPIQTQGSQSSQQGHCLEVGRFGLDQEIDRLRRDKQVLMMELVRLRQQHQTTRSYLETMEQRLKATEMKQQQMMAFLAKAMKNPMFIQQLIQQKEKRKELEDAITKKRRRPIEQGPSCSTTVKVENPPEFAGYGGSEFGVSELQVLALEMQGYGRGGRRECEHDDEQEQERLDKELDDEGFWEELFSEHYDEGEMDISQEDEEEDVNVLANRMGYLGSTPK 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211705g00004 369 SMART hsfneu3 47 140 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc211705g00004 369 MobiDBLite consensus disorder prediction 303 322 - -
Stsc211705g00004 369 ProSitePatterns HSF-type DNA-binding domain signature. 90 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc211705g00004 369 Gene3D - 43 141 IPR036388 -
Stsc211705g00004 369 Pfam HSF-type DNA-binding 51 140 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc211705g00004 369 SUPERFAMILY "Winged helix" DNA-binding domain 47 140 IPR036390 -
Stsc211705g00004 369 Coils Coil 176 196 - -
Stsc211705g00004 369 Coils Coil 238 258 - -
Stsc211705g00004 369 PRINTS Heat shock factor (HSF) domain signature 89 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc211705g00004 369 PRINTS Heat shock factor (HSF) domain signature 51 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc211705g00004 369 PRINTS Heat shock factor (HSF) domain signature 102 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc211705g00004 369 MobiDBLite consensus disorder prediction 141 160 - -
Stsc211705g00004 369 FunFam Heat shock transcription factor 1 44 141 - -
Stsc211705g00004 369 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 37 267 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211705g00004 Stsc-Chr211705 19276 27760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211705g00004 37 367 HSF AT3G22830 53.056 3.06e-129 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc211705g00004 HSF_DNA-bind 1.5e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211705g00004 K09419 - gmx:100811798 498.049