Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211701g00002 ATGGAGAAGAAGGAATTGGATACCACCAACAACGCCAATGCTGCTCTTCACCCACTCAAGAACAAATTCGTACTGTGGTACACTCGTAGAACACCCGGAGTTCGAAACCACACCTCAGATTCGTACGAAGACAGCATCAAGAAGATTGTTCATTTCAGATTTTGGGTGTGCTATTGCCATCTATCTCGCCCTTCTGCCTTGCCAGTTCCCACTGATTTGCACCTTTTTAAGGAAGGAATCCGCCCTTTGTGGGAGGATTCTGCTAACTGCAATGGTGGTAAGTGGATTATTCGATTCAATAAGGTTGTCTCGGGTCGATTTTGGGAAGACCTGGTTCTTGCCTTAGTGGGTGACCAACTAGATTATGGAGATGACATCTGTGGTGCAGTACTAAGCATTCGTTTCAACGAAGACATAGTGAGTGTCTGGAATCGCAATGCTTCTGATAATCAGGCTATAATGGGTCTGAGAGATTCAATCAAGCGCCATCTAAAGCTTCCCCATGGATATGTTATGGAGTATAAACCCCACGATGCCTCTCTGCGTGACAATTCCTCTTACAGAAACACCTGGTTGAGAGGCTAG 585 0.4564 MEKKELDTTNNANAALHPLKNKFVLWYTRRTPGVRNHTSDSYEDSIKKIVHFRFWVCYCHLSRPSALPVPTDLHLFKEGIRPLWEDSANCNGGKWIIRFNKVVSGRFWEDLVLALVGDQLDYGDDICGAVLSIRFNEDIVSVWNRNASDNQAIMGLRDSIKRHLKLPHGYVMEYKPHDASLRDNSSYRNTWLRG 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211701g00002 194 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 6 183 IPR001040 GO:0003723|GO:0003743|GO:0006413
Stsc211701g00002 194 Gene3D RNA Cap, Translation Initiation Factor Eif4e 1 187 IPR023398 -
Stsc211701g00002 194 ProSitePatterns Eukaryotic initiation factor 4E signature. 72 95 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
Stsc211701g00002 194 Pfam Eukaryotic initiation factor 4E 18 174 IPR001040 GO:0003723|GO:0003743|GO:0006413
Stsc211701g00002 194 SUPERFAMILY eIF4e-like 13 190 IPR023398 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211701g00002 Stsc-Chr211701 5502 8535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211701g00002 17 194 Eukaryotic Initiation Factors Gene Family AT5G18110 80.769 1.09e-109 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211701g00002 K03259 - qsa:O6P43_009857 342.043