Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211700g00006 ATGGCCTTTCCATTAGATTCCAATGGGACGGAACCCCAGAAGTACCTAAAACCAGAACCTGATCAACAAGAAGAGATGGATGGGTTCTTGATTGCAAGGCAAATAACAATTTCATCAGCTGTGGTTCCAATGGTTTTGAGGACAGCTATTGAGCTTGGTGTATTTGACATCATAGCCAAAGCAGGTGAAGGTGCAAAGCTCTCAGCACAAGACATTGTGGATCAAATTGGAACCAACAACCCTGAAGCGCCAACTATGTTGGATCGTCTTCTTAGGCTTCTTGCAAGTCACTCGTTATTGTGTTGTTCTGTTGTTGAAGATCCACAAAATCCTACTAAGTTTCATAGGAGGCTTTATGGCCTCTCACCTACTTCCAAACATTTTGTGACTGATGCTGATGGTTTTTCTTTGGCATCCATGTTGTCTTTTCATTTGGATAAGGTTTTCTACCAAAGCTGGAGTGAATTGAAAGGAGCAATTCTTGAAGGAGGTATACCATTCAATAGGGCTCATGGCATGCATGTGTTTGAGTATGCAAAGATTGATCCTAGGTTCAATGAGGTTTTCAATAAGGCCATGGTCAACACCTCCACTATATTAATGAAGAGGACTCTTGATCTCTACAAAGGATTTGAGCATATTAATAAACTAGTGGATGTTGGTGGTGGTGTTGGGAACAATCTTAAATTGATCACTTCTAAGTACCCTCATATTCATGGTATCAACTTTGATGTGCCTCATGTCATAGAAGGTGCTCCCACCTATACTGGTGTGGAGCACGTGGCAGGGGATATGTTTGAGTGTGTTCCTAATGGAGATGCTATTTTCATAAAGAGAGTACTTCATGATTGGAGCGATGAAGAATGCTTGAAGATACTGAAGAACTGTTACAAGGCTGTACCCAATGATGGGAAGGTGATTGTGATGGACATGATCATTCCCATTGTGCCTGAGCCAACAGCTATTGTCAAAGACTCTTTTAGATCTGATGTTGTCATGATGACTCACATGCCAGGAGGGATTGAAAGAAGCAAGCAAGATTTCATGGACTTAGCAAATGCATCTGGATTCAATGGCATAAGGTTTGTGTGTTGTGTCTCTAGCTTCTGGATCATGGAGTTCTACAAGTAG 1131 0.4156 MAFPLDSNGTEPQKYLKPEPDQQEEMDGFLIARQITISSAVVPMVLRTAIELGVFDIIAKAGEGAKLSAQDIVDQIGTNNPEAPTMLDRLLRLLASHSLLCCSVVEDPQNPTKFHRRLYGLSPTSKHFVTDADGFSLASMLSFHLDKVFYQSWSELKGAILEGGIPFNRAHGMHVFEYAKIDPRFNEVFNKAMVNTSTILMKRTLDLYKGFEHINKLVDVGGGVGNNLKLITSKYPHIHGINFDVPHVIEGAPTYTGVEHVAGDMFECVPNGDAIFIKRVLHDWSDEECLKILKNCYKAVPNDGKVIVMDMIIPIVPEPTAIVKDSFRSDVVMMTHMPGGIERSKQDFMDLANASGFNGIRFVCCVSSFWIMEFYK 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211700g00006 376 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 134 374 IPR029063 -
Stsc211700g00006 376 FunFam Caffeic acid O-methyltransferase 129 376 - -
Stsc211700g00006 376 MobiDBLite consensus disorder prediction 1 22 - -
Stsc211700g00006 376 Gene3D Vaccinia Virus protein VP39 129 376 IPR029063 -
Stsc211700g00006 376 FunFam Caffeic acid 3-O-methyltransferase 11 128 - -
Stsc211700g00006 376 SUPERFAMILY "Winged helix" DNA-binding domain 24 131 IPR036390 -
Stsc211700g00006 376 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 34 376 IPR016461 GO:0008168
Stsc211700g00006 376 Gene3D - 10 128 IPR036388 -
Stsc211700g00006 376 PIRSF O-mtase 12 376 IPR016461 GO:0008168
Stsc211700g00006 376 Pfam O-methyltransferase domain 153 358 IPR001077 GO:0008171
Stsc211700g00006 376 Pfam Dimerisation domain 44 95 IPR012967 GO:0046983
Stsc211700g00006 376 PANTHER O-METHYLTRANSFERASE 38 374 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211700g00006 Stsc-Chr211700 46462 56322 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211700g00006 20 376 Monolignol Biosynthesis Gene Families AT5G54160 49.860 2.27e-126 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211700g00006 K13066 - gmx:100789402 460.685