Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2116g00005 ATGCACGACATGCTGTCGGCGATAGAGAGGTACAAGGCGACGTACCTGCCGCTGGTGCCGCCGATTCTGGTGGCGATGCTCAACAACGCGGAGGCGATTAAGGGGAAGTATGATTTGAGGTCTTTGCATTCGGTGCTTTCGGGTGGAGCTCCGCTTAGCAAAGAGGTGATTGAAGGCTTCGTGGAGAAGTACGGCACGGCGGGGCTCCTCTCTCCGGGAACTGAGGCTAAGGTTGTTGATCCTGACTCCGGCGTCGCCCTTCCCGTGAACCGGACCGGTGAGCTTTGGCTGAGGGGTCCCACCATCATGAAAGGTTATTTCAGTAACGAAGAAGCAACGGCATCTACACTTGATTCAGAAGGATGGTTAAGAACAGGGGATGTTTGCTTCATCGAGAATGATGGCTTCATATTTATTGTGGATAGGTTGAAAGAGCTCATCAAGTACAAGGGATATCAGGTGCCTCCAGCAGAACTAGAGGCCTTGTTGCTCACACATCCCTCTATTGCTGATGCTGCTGTCATCCCCTTCCCAGATAAGGAGGCTGGCCAAATTCCAATGGCCTATGTTGTAAGAAAGCCTGGAAGCACCATTTCAGAGAAGCAAGTCATGGATTTTGTTGCAAATCAGGTGGCTCCATACAAAAGAATTCGAAAGGTTGCTTTTATATCTTCTGTACCCAAAAATCCATCTGGCAAAATTCTAAGGAAGGATCTCATTAAGCTTGCAACCTCTAAACTCTGA 744 0.4933 MHDMLSAIERYKATYLPLVPPILVAMLNNAEAIKGKYDLRSLHSVLSGGAPLSKEVIEGFVEKYGTAGLLSPGTEAKVVDPDSGVALPVNRTGELWLRGPTIMKGYFSNEEATASTLDSEGWLRTGDVCFIENDGFIFIVDRLKELIKYKGYQVPPAELEALLLTHPSIADAAVIPFPDKEAGQIPMAYVVRKPGSTISEKQVMDFVANQVAPYKRIRKVAFISSVPKNPSGKILRKDLIKLATSKL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2116g00005 247 Gene3D - 1 70 - -
Stsc2116g00005 247 FunFam 4-coumarate--CoA ligase 2 145 246 - -
Stsc2116g00005 247 SUPERFAMILY Acetyl-CoA synthetase-like 3 244 - -
Stsc2116g00005 247 Pfam AMP-binding enzyme 63 149 IPR000873 -
Stsc2116g00005 247 Pfam AMP-binding enzyme C-terminal domain 158 233 IPR025110 -
Stsc2116g00005 247 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 2 241 - -
Stsc2116g00005 247 Gene3D - 143 246 IPR045851 -
Stsc2116g00005 247 Gene3D Luciferase; Domain 3 71 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2116g00005 Stsc-Chr2116 7796 9371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2116g00005 1 247 Monolignol Biosynthesis Gene Families AT1G20500 62.455 1.36e-124 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2116g00005 K10526 - gmx:100811344 427.172