Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211697g00006 ATGCCTTCCTCTTCTTCCACTTCCAGACAACCAATTCCCCAGTCTCGCAAGCAAAAGTCCCTCGGTCTCTTATGCACCAATTTCCTCTGCTTGTATAATAAACACGACGTCCAAGTCATCGGCCTCGACGCCGCCGCCGCCCGATTAGGTGTTGAGAGAAGACGGATCTACGATATAGTCAATATTCTCGAGAGCATCGGGGTGCTTGCAAGAAAGGCCAAAAATCAATATACATGGAAAGGCTTTGGCGCAATTCCCGGTGCTTTACATGAACTCAAGGAGGAGGGATTAAGGGAGAATGCATATGGTTTTGAGGGCGGCAATGACCTAAAAGTGTCTGATGACGAGGATGATGAAGAAACATTTTCCAATCCAGGGACCGGGAGTCAAAATGACAAGTCCAATTCCAATTCAAATTCAAATTCTGCAACACTTGCCAAATCTCTCAAAAACGATAATCGAAGGGAAAAATCATTGGCGCTGCTTACTCAGAATTTTGTAAAGCTATTTGTTTGCTCTAATATAGAAATGATCTCCCTTGATGAGGCTGCGAATTTGTTGCTTGGAGATGGCCACAGTACATCATTAATGAGAACAAAAGTAAGACGCCTATATGATATTGCAAATGTGTTGTCCTCCATGAACCTTATCGAGAAGACTCATACCACAGATACAAGAAAACCAGCATTCAGGTGGCTGGGTTTGAGAGGGAAGGCACCAAATGAGTCCATTCACAAAAGTTCAAATACAAACGAGTCTAGGAAAAGAGCGTTTGGGAGTGATGTCACAAACATTAGTTTTGAGAGGAACATAGTGGAATTAGGGGACTTCGCCTCTAAGAAGCTCAAAAAACTGGACAATGATAATGGCATAGGTCAAGCAAATAGTTTTCAACAAACTTCAAAGGGTTTTCAGTTTGGTCCTTTCGCACCCTATGTGCCCAAAGTTGGAACACCAGAGAATAATAGTGTAAAGAAGGTTCATGATTGGGACAGTCTAGCACTTAAACATCGTCCACAATACCAAAACCAAGCTTTGAAAGAACTATTCTCCCATTATATGGAAGCATGGAAATCGTGGTACTCAGAAGTTGCCGGTAAGAATCCAATGCAGATTTAG 1119 0.4254 MPSSSSTSRQPIPQSRKQKSLGLLCTNFLCLYNKHDVQVIGLDAAAARLGVERRRIYDIVNILESIGVLARKAKNQYTWKGFGAIPGALHELKEEGLRENAYGFEGGNDLKVSDDEDDEETFSNPGTGSQNDKSNSNSNSNSATLAKSLKNDNRREKSLALLTQNFVKLFVCSNIEMISLDEAANLLLGDGHSTSLMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGLRGKAPNESIHKSSNTNESRKRAFGSDVTNISFERNIVELGDFASKKLKKLDNDNGIGQANSFQQTSKGFQFGPFAPYVPKVGTPENNSVKKVHDWDSLALKHRPQYQNQALKELFSHYMEAWKSWYSEVAGKNPMQI 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211697g00006 372 FunFam E2F transcription factor-like E2FE 149 236 - -
Stsc211697g00006 372 SUPERFAMILY "Winged helix" DNA-binding domain 15 79 IPR036390 -
Stsc211697g00006 372 SMART E2F_TDP_2 154 234 IPR003316 GO:0005667|GO:0006355
Stsc211697g00006 372 SMART E2F_TDP_2 16 81 IPR003316 GO:0005667|GO:0006355
Stsc211697g00006 372 Pfam E2F/DP family winged-helix DNA-binding domain 156 234 IPR003316 GO:0005667|GO:0006355
Stsc211697g00006 372 Pfam E2F/DP family winged-helix DNA-binding domain 17 81 IPR003316 GO:0005667|GO:0006355
Stsc211697g00006 372 Gene3D - 149 236 IPR036388 -
Stsc211697g00006 372 Gene3D - 11 84 IPR036388 -
Stsc211697g00006 372 PANTHER TRANSCRIPTION FACTOR E2F 11 342 IPR015633 GO:0000978|GO:0006357
Stsc211697g00006 372 FunFam E2F transcription factor 8 12 83 - -
Stsc211697g00006 372 MobiDBLite consensus disorder prediction 108 144 - -
Stsc211697g00006 372 MobiDBLite consensus disorder prediction 123 144 - -
Stsc211697g00006 372 SUPERFAMILY "Winged helix" DNA-binding domain 156 235 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211697g00006 Stsc-Chr211697 32966 35787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211697g00006 15 370 E2F-DP Transcription Factor Family AT3G48160 54.595 4.04e-128 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Stsc211697g00006 E2F_TDP 1.8e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211697g00006 K09391 - gmx:100806151 493.426