Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211696g00006 ATGTCATCACTTACTTTCATCTTAGCCACAAGCAATCACATGTTCTTCACCCTCCCTAAGCTTCAACTTTTTGAAATTGGTGGCAATCAGATGTCAGGTTTAATCCCTAGTTCAATCACTAATGCCACCCTTCTTCAAAGATTTGATATCACTGATAACAGTTTCTTTGGGGGAGTTCCAAGTTTAGCAAAGCTGCAAGATCTTTGGTGGTTAAATCTTGGTTTGAATTATCTAGGCAGTAATTCAGCTAAGGACTCTGAGTTCTTAGAATCTTTGCAAAACTGTAGTAAGTTGGAAATACTATCCATAGCTTACAACAATTTCAGAGGTCATTTACCTGAAAACATAGGCAACTTTTCCACCCTACTCAGAGAAGTTTACCTTGGTGATAATCTACTGTCGGGAAAAATTCCTGTCACATTAGCAAATCTCATAAATTTAGATCTCTTCTCCATGGAATTTAACTATTTTACTGGAACCATTCCAACATCCTTTTTGAAATTTCAATCAATAGAAACATTGGATTTGAGTTATAACCAGTTGTCAGGAGAGATTCCAGCCATTGTAGGCAACCTCAGCCATTTGCTTGAGCTGAGAATGTCAGACAATATGTTAGAAGGAAATATTCCTCCAAGTATAGGAAATTGCCACAATTTAGAAATTCTAGACCTTGGAAATAACAACCTTAGTGGAATGATACCTTCACAAGTTATTAGTCTTTCTTCTTTGACAATCCTACTCAACTTATCCGAAAATTCATTGACAGGCAGTCTTTCGGAGCAAGTGGGTAGGTTGAAATTTATTCTTCAGTTGGATGTATCAAAAAATCATCTGTCTGGTTACATTCCTGAAGCTATTGGGGGATTGATAAACCTGGAGTACCTTAATTTACAAGGGAATTCCTTCAATGGAACCATACCTTCATCTCTGGCTTTGGTGAAGAGTCTCCAACATTTAGACCTGTCAAGTAACAACTTGTCTGGATCGATTCCGGTGGCTCTAGAGGATATGTCTTCACTAGAATACCTAAATCTTTCTTTTAACAAGTTGGATGGTGAAGTGCCAACAAAAGGTGTCTTCAAAAATGCAACTGCAATAGCAGTGATTGGTAATAGTAAGCTTTGTGGGGGAATCTCTAAGCTACAACTACCACCATGCCAAGGTTCAAAATATCAAAAACATCATAATTTCAAGCTGATATCAGTGATAGGTTCCATGGTTGCTTTTCTTCTTCTTTTGTCTTCTGTATTTGCACTTTATAAGATGAGGAAAAGAAAGAATGAACCATTTTCTAATTCAGTATCAGTTGATCAGCTTGAAATGGTGTCATATCAAAACCTTCACCAAGCAACTAATGGTTTCTCAGCTAACAATTTGATAGGATCTGGACATTTTTGTTCTGTCTACAAGGGAAGCCTTGATTCAACTGACAAAGCCGTTGCTATAAAGGTCCTCAACCTTCAAAAGAAAGGAGCTCACAGGAGTTTCATTGCTGAATATTACAAGGGCCAAGAATTCAAAGCTCTAGTTTTTAAATACATGGAGAATGGAAGCTTAGATAAATGGCTGCATCCAGATAGTGAAAGTGTAGATGTGCCACAAACCTTGAGCCTTAATCAGAGAATAAGAATTCTAATTGACGTTGCTTCAGCAATGCATTATCTTCACTATGAATGTGAGCAACCTGTCATTCATTGTGATATAAAGCCAAGCAACATCCTTCTTGATAATGACATGGTTGCTCATGTGGGTGACTTTGGATTAGCTAGAATTCTCTCAACTATTAATGGCACCACTTATGAGCAAAACACTACATCTGGAATCAAGGGAACTATTGGTTACACTCCTCCAGTAATATCTTCCAAAGTATTAACCAAGCTAGAGCATATTGCAGAGTATGGAATGGGTTCCGAGGCGTCAAAACAAGGCAATGTATATAGCTTTGGGATTCTTATTCTGGAAATGCTCACAGCAAGAAGGCCTATTGAGGAAACATTTGAAGATGGTCAAAATCTCCATAGCTATGTGAAAATGGGGTTGACAGATAAAATGTTTCAGATGGTAGACCCGGTTATTCTGTATGCAGAAATAAATGGAACAAGAGAAGCAGAAAACAGCATGGGGAACTTGACACTAAAACGTTCTAATGCAGACAAGTGTTTACAATCACTATTTAAGATTGGACTTGCTTGTTCAGTGGAGCCACCAAAAGAAAGAATGAGCATGGAGGATGTCCTCATAGAGCTAAACCTAATAAAGAATTCCTTCAAGATTGACTAG 2280 0.3776 MSSLTFILATSNHMFFTLPKLQLFEIGGNQMSGLIPSSITNATLLQRFDITDNSFFGGVPSLAKLQDLWWLNLGLNYLGSNSAKDSEFLESLQNCSKLEILSIAYNNFRGHLPENIGNFSTLLREVYLGDNLLSGKIPVTLANLINLDLFSMEFNYFTGTIPTSFLKFQSIETLDLSYNQLSGEIPAIVGNLSHLLELRMSDNMLEGNIPPSIGNCHNLEILDLGNNNLSGMIPSQVISLSSLTILLNLSENSLTGSLSEQVGRLKFILQLDVSKNHLSGYIPEAIGGLINLEYLNLQGNSFNGTIPSSLALVKSLQHLDLSSNNLSGSIPVALEDMSSLEYLNLSFNKLDGEVPTKGVFKNATAIAVIGNSKLCGGISKLQLPPCQGSKYQKHHNFKLISVIGSMVAFLLLLSSVFALYKMRKRKNEPFSNSVSVDQLEMVSYQNLHQATNGFSANNLIGSGHFCSVYKGSLDSTDKAVAIKVLNLQKKGAHRSFIAEYYKGQEFKALVFKYMENGSLDKWLHPDSESVDVPQTLSLNQRIRILIDVASAMHYLHYECEQPVIHCDIKPSNILLDNDMVAHVGDFGLARILSTINGTTYEQNTTSGIKGTIGYTPPVISSKVLTKLEHIAEYGMGSEASKQGNVYSFGILILEMLTARRPIEETFEDGQNLHSYVKMGLTDKMFQMVDPVILYAEINGTREAENSMGNLTLKRSNADKCLQSLFKIGLACSVEPPKERMSMEDVLIELNLIKNSFKID 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211696g00006 759 FunFam LRR receptor-like serine/threonine-protein kinase EFR 84 392 - -
Stsc211696g00006 759 PANTHER OS04G0122200 PROTEIN 1 747 - -
Stsc211696g00006 759 SUPERFAMILY L domain-like 123 376 - -
Stsc211696g00006 759 Gene3D Phosphorylase Kinase; domain 1 424 506 - -
Stsc211696g00006 759 Pfam Protein kinase domain 500 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211696g00006 759 Gene3D Ribonuclease Inhibitor 1 389 IPR032675 -
Stsc211696g00006 759 SMART LRR_typ_2 192 216 IPR003591 -
Stsc211696g00006 759 SMART LRR_typ_2 217 240 IPR003591 -
Stsc211696g00006 759 SMART LRR_typ_2 337 362 IPR003591 -
Stsc211696g00006 759 SMART LRR_typ_2 289 312 IPR003591 -
Stsc211696g00006 759 SMART LRR_typ_2 313 336 IPR003591 -
Stsc211696g00006 759 SUPERFAMILY L domain-like 13 165 - -
Stsc211696g00006 759 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 514 759 - -
Stsc211696g00006 759 PRINTS Leucine-rich repeat signature 316 329 - -
Stsc211696g00006 759 PRINTS Leucine-rich repeat signature 337 350 - -
Stsc211696g00006 759 ProSiteProfiles Protein kinase domain profile. 454 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211696g00006 759 Pfam Leucine rich repeat 291 350 IPR001611 GO:0005515
Stsc211696g00006 759 Gene3D Transferase(Phosphotransferase) domain 1 514 758 - -
Stsc211696g00006 759 SUPERFAMILY Protein kinase-like (PK-like) 428 750 IPR011009 -
Stsc211696g00006 759 SMART serkin_6 454 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211696g00006 759 ProSitePatterns Serine/Threonine protein kinases active-site signature. 563 575 IPR008271 GO:0004672|GO:0006468
Stsc211696g00006 759 Pfam Leucine Rich repeat 170 184 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211696g00006 Stsc-Chr211696 35867 38267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211696g00006 18 756 Receptor kinase-like Gene Family AT3G47570 41.032 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc211696g00006 Pkinase 2.3e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211696g00006 - - ahf:112783139 976.081