Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211686g00008 ATGCCTACGCACTGTGGTTGTTTCCGAAGGGGCTTTTGGCCAATGATGCTATTACCCTATGTTTTCCTCATTACGGCGATTATACTTATATGCATAGGAGGTGGATCTAAACATGGTGATTCTAATATTTCTCAATTGGTCACTATTGGTCTCGGTATCTTTATGCTTTTGGTTTTCTTGTTCGTGTTGATTAAATTTGACAGGCTTTCCCGTATCTATTTGAGAGAAAACTCAGAAGAGAATAATACTATTGAGATCACAAGAAATATTAGAGTGGTTCCTTGGCTGGATAATGACGATAATCTTATGATAACGCTTCAAATAGATAGCCAAGGGACACAAGAACAGTCAACAGAGTTGCCTTTTAGCCAGAGTAAGCGGATTGCTAGGCTCGCTTTGAAGGCATTGCCACCAGCTAAGAGCTTCAAGGAGGAAGAAGAGGACGCCAATGGATCAGCTGGCCGGAGAGTTGATTGTTGTCCTATTTGCTTCGAAGAGTTCAAGAATGGGGAGTTGATTCAACCTTTTGGAGCATGTGTTCATGAGTTCCATTCGAATTGCATAAATTCTTGGTTGCACAGTGGCAAAATCAGTTGTCCACTATGTCGTGCAAATTTAGCTACATTTGTTGATTGA 636 0.4088 MPTHCGCFRRGFWPMMLLPYVFLITAIILICIGGGSKHGDSNISQLVTIGLGIFMLLVFLFVLIKFDRLSRIYLRENSEENNTIEITRNIRVVPWLDNDDNLMITLQIDSQGTQEQSTELPFSQSKRIARLALKALPPAKSFKEEEEDANGSAGRRVDCCPICFEEFKNGELIQPFGACVHEFHSNCINSWLHSGKISCPLCRANLATFVD 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211686g00008 211 SMART ring_2 160 202 IPR001841 -
Stsc211686g00008 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 208 IPR013083 -
Stsc211686g00008 211 PANTHER RING FINGER DOMAIN-CONTAINING 54 206 - -
Stsc211686g00008 211 SUPERFAMILY RING/U-box 159 208 - -
Stsc211686g00008 211 ProSiteProfiles Zinc finger RING-type profile. 160 203 IPR001841 -
Stsc211686g00008 211 Pfam Zinc finger, C3HC4 type (RING finger) 160 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211686g00008 Stsc-Chr211686 24342 24977 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211686g00008 48 205 C3H Transcription Factor Family AT2G27940 27.439 5.37e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211686g00008 - - ahf:112718325 236.884