Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211686g00006 ATGCCTACCTACTATGTTTGTTTCCGAAGGGGCTTTTGGCCAATGATGCTAGTACCCTATGTGTTCCTCATTACGGCGATTATACTTCTATGCATAGCAGGTGGATCTAAACGTGGTGGTTCTAATATTTCTCAATTGGCCACTGGTCTCGGTGTCTTTATGATTTTGGTTTTCTTGTTCCTCTTCATTAAATTTGACAGGTCTTCGCGTATATATTTGAGAGAAAACTCAGAAGAGAATAATGCTATTGAGATCACAAGAAATATTAGAGTGGTTCCTTGGTTGGATAGCGATGATAATCTTATGATAACGCTTCAAATAGATAGCCAAGAGGCACAAGAACAGTCAACAGAGTCGCCTTTTAGCCGGAGTATGCGTATTGCTAGGCTCGCTTTGAAGGCGTTGCCGCCGGCTAAGAGCTTCAAGGCGGATGAAGAGGACGCCAATGGATCAGCCGGCCGGAGAGTTGATTGTTGTTCTATTTGCTTCGAAGAGTTTAAGAACGGGGAGTTGATTCAACCTTTTGGAGAATGTGTTCATGAGTTCCATTCGAATTGCATAAATTCTTGGTTGCATTGTGGCAAAATCAGTTGTCCGCTATGTCGTGCAAATTTAGCTACATTTGTTGATTGA 633 0.4218 MPTYYVCFRRGFWPMMLVPYVFLITAIILLCIAGGSKRGGSNISQLATGLGVFMILVFLFLFIKFDRSSRIYLRENSEENNAIEITRNIRVVPWLDSDDNLMITLQIDSQEAQEQSTESPFSRSMRIARLALKALPPAKSFKADEEDANGSAGRRVDCCSICFEEFKNGELIQPFGECVHEFHSNCINSWLHCGKISCPLCRANLATFVD 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211686g00006 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 207 IPR013083 -
Stsc211686g00006 210 SUPERFAMILY RING/U-box 158 207 - -
Stsc211686g00006 210 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 40 205 IPR044675 -
Stsc211686g00006 210 Pfam Zinc finger, C3HC4 type (RING finger) 159 201 - -
Stsc211686g00006 210 ProSiteProfiles Zinc finger RING-type profile. 159 202 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211686g00006 Stsc-Chr211686 21533 22165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211686g00006 120 204 C3H Transcription Factor Family AT2G27940 32.941 1.48e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211686g00006 - K11980 ahf:112718325 228.794