Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211685g00006 ATGGATTCATCTGTTTCCCAAGTAGTAGTTGATTGTGATGACCAATTTTCAAGGTCTTTTCAAAGTGTTGAGCAAACACATACTGTTCATAAGAAGTCTTCATGGCACAAACTTCTTGCCTCCATTGGTGCCCATGAAATTTGCTCAATAGAGACATGGAAGGCAGCATTTACTGAGTTAGTTGCAACTGCTTCTCTAATGATCACACTGACAACATCAATCATAGCATGCTTGGAGTCACATGAAGTTGATCCAAAGCTTCTTATCCCCATTGCAGTGTTCATCATAGCCTTCTTGTTCCTCATAGTCACAATTCCACTCTCTGGGGGTCACATGAGTCCTGTTTTCACATTCATAGCAGCATTAAAGGGTGTTGTCACCCTCACACGTGCACTAATTTATGTCATGGCACAATGCATTGGTTCAATAATTGGTTTCATCATGCTAAAATGTGTTATTGACCCAAAATTGGAACACAAATACTCATTAGGAGGGTGTTTAATTGGTGATGATCATAATGGACTAGGATCAAAGCCACAAGTTGCATTGCTATTGGAATTTTCATGCACTTTTTTGGTGCTGTTTATTGGTATTACTTTGGGATTTGATAAGAGAAGGTCCAAGGAGTTAGGGCTACCTATGGTGTGTGTTGTGATTGCTGGGGGAATGGCATTGGCAGTGTTTGTGTCTATAACTGTTACTGGCCAACCGGGCTATGCAGGTGAGAGTTTGCCTTTGGAAGATGGAGAATATGATGTGTTGAATTTGACTTTGGGCCATAGTAGGAGTGTCTCTAGGAGTGCTGTCTCAAATGATCTTCAAGTTTGA 828 0.4082 MDSSVSQVVVDCDDQFSRSFQSVEQTHTVHKKSSWHKLLASIGAHEICSIETWKAAFTELVATASLMITLTTSIIACLESHEVDPKLLIPIAVFIIAFLFLIVTIPLSGGHMSPVFTFIAALKGVVTLTRALIYVMAQCIGSIIGFIMLKCVIDPKLEHKYSLGGCLIGDDHNGLGSKPQVALLLEFSCTFLVLFIGITLGFDKRRSKELGLPMVCVVIAGGMALAVFVSITVTGQPGYAGESLPLEDGEYDVLNLTLGHSRSVSRSAVSNDLQV 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211685g00006 275 PANTHER AQUAPORIN-LIKE 19 243 - -
Stsc211685g00006 275 Gene3D Glycerol uptake facilitator protein. 10 240 IPR023271 -
Stsc211685g00006 275 PRINTS Major intrinsic protein family signature 130 149 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211685g00006 275 PRINTS Major intrinsic protein family signature 54 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211685g00006 275 PRINTS Major intrinsic protein family signature 93 117 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211685g00006 275 SUPERFAMILY Aquaporin-like 51 235 IPR023271 -
Stsc211685g00006 275 Pfam Major intrinsic protein 48 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211685g00006 Stsc-Chr211685 24624 25969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211685g00006 46 235 Major Intrinsic Protein MIP AT3G61430 26.866 1.05e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211685g00006 K09866 - gmx:100804160 314.694