Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211683g00006 ATGGCAACCATGCCTCTCTTCAAGCCCCTTACAATGGTATCACAATCATGCCTACTTTCTCCCCCGTCATTCTCTTACAACAAACCCAAACACTCCTCCTTTCACTCAATTCCTCATTCTTCTACCCCACTCAGATTCCAACTTGCATGCTTCAACTCTTCTTCGCTCCTTTCTCTTTCACCCTCTCTATGCCTCACCACCAGGACCATTCATCGTTCTCCTGTGCTCACTTTTGTCGCACAAGCATCATCAGATTGGGCTCAGCAGCAACAAGTTGATGGTGAAGAAGAAGAAGAAGAAGCAACGTGGGAGAACGAAGGCGAACCCAAATGGGAAAACCAAGATGATGAAACTGAAGCTCTGGTTGATGGTAGTGAGGGAGATGGGGAAGGTGGCTTTGATGAACCTTCCGAGGATACAAAACTCTTTGTTGGGAACCTGCCTTTTGATGTTGATAGCCAAAGACTTGCCATGCTCTTCGAGCAAGCTGGAGCGGTGGAGATAGCTGAGGTAATTTACAATAGGGCAACCGACCGGAGTCGCGGGTTTGGATTTGTAACAATGAGTACAATTGAGGAAGCTGACAGAGCTGTGGAGAAGTTCAGTGGCTATGAATTAGATGGAAGAACATTGACCGTTAATAAGGCTGCTCCAAGAGGAACGCAGCCGGAGCGCACGCCACGCGCCTTTGATTCTTCTTTAAGAGTATATGTTGGTAACTTGCCTTGGGATGTTGATAATATTCGACTTGAGCAAATTTTCAGTGAACATGGTAAGGTTGAGCAAGCTCGGATAGTCTATGACAGAGAAACCGGTAGATCACGCGGCTTTGGCTTTGTCACAATGTCCAGTGAGACCGATATGAATGATGCCATTGCTGCTCTTGATGGCCAGAACTTGGATGGGCGATCCCTTAGAGTGAATGTTGCTGAGGAGAGGCCCAGACGCAGCTTCTGA 957 0.4744 MATMPLFKPLTMVSQSCLLSPPSFSYNKPKHSSFHSIPHSSTPLRFQLACFNSSSLLSLSPSLCLTTRTIHRSPVLTFVAQASSDWAQQQQVDGEEEEEEATWENEGEPKWENQDDETEALVDGSEGDGEGGFDEPSEDTKLFVGNLPFDVDSQRLAMLFEQAGAVEIAEVIYNRATDRSRGFGFVTMSTIEEADRAVEKFSGYELDGRTLTVNKAAPRGTQPERTPRAFDSSLRVYVGNLPWDVDNIRLEQIFSEHGKVEQARIVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQNLDGRSLRVNVAEERPRRSF 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211683g00006 318 FunFam 31 kDa ribonucleoprotein, chloroplastic 224 318 - -
Stsc211683g00006 318 SMART rrm1_1 141 214 IPR000504 GO:0003723
Stsc211683g00006 318 SMART rrm1_1 235 308 IPR000504 GO:0003723
Stsc211683g00006 318 MobiDBLite consensus disorder prediction 87 139 - -
Stsc211683g00006 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Stsc211683g00006 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 211 IPR000504 GO:0003723
Stsc211683g00006 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 236 306 IPR000504 GO:0003723
Stsc211683g00006 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 234 312 IPR000504 GO:0003723
Stsc211683g00006 318 SUPERFAMILY RNA-binding domain, RBD 136 227 IPR035979 GO:0003676
Stsc211683g00006 318 MobiDBLite consensus disorder prediction 118 133 - -
Stsc211683g00006 318 CDD RRM2_NsCP33_like 235 310 - -
Stsc211683g00006 318 MobiDBLite consensus disorder prediction 91 105 - -
Stsc211683g00006 318 PANTHER OS02G0815200 PROTEIN 31 316 - -
Stsc211683g00006 318 CDD RRM1_PSRP2_like 141 220 - -
Stsc211683g00006 318 Gene3D - 80 223 IPR012677 -
Stsc211683g00006 318 Gene3D - 224 317 IPR012677 -
Stsc211683g00006 318 SUPERFAMILY RNA-binding domain, RBD 227 316 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211683g00006 Stsc-Chr211683 44905 47345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211683g00006 138 316 Eukaryotic Initiation Factors Gene Family AT3G16380 32.979 1.98e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211683g00006 - - gmx:100804984 355.525