Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211683g00003 ATGATCCTATGTTACGCACTCTTTGTTTTCCTTACACTTCTCTTCCTCATCTTAACATTTACAAAATCAGATCTAAAAAGAAATAATCTTCCTCCTGGTCCATGGAGATTACCATTCATCGGAAACCTTCACCAAGTTGGGGAGCTCCCCCATCGTTCCCTTCAACAATTGTCAAGTCTTTATGGACCACTCATGTTCTTGAAGCTGGGTTCTGTCCCTACTTTGGTGGTCTCCTCCGCCGAGATAGCCGAAGAGATCTTCAAGAACCATGACTTGGCTTTCTCTGGCCGCCCCAAGCTGTATGCCGCGAACCGTTTGGGATATAACGGTTCAGCTGTTACTTTCACTCCTTATGGTGATTACTGGAAGGAGATAAGGAAAATTATGATGTTGGAGTTGCTCAGTGCCAAGAGGGTTCAATCTTTTCAAGCTGTGAGGCTTGAAGAGGTTCAGATTCTCCTCCATTCCATAGCTCTTTCTGGTGGTACTCCTGTTAACCTTAGCCAGTTGACGCTTTCTCTTACAAATAATGTTGTTTGTCGGATTGCTTTTGGCACAAGATTTGGGGGTCCAAGTAGTAAGTTCTATGAGGTGCTTAGGGAAACACAGGAGTTGTTGGGAGGGTTCTGTTTGGCAGACTTCTTTCCTTGGTTGTGGTGGCTCAACAAGTTCAATGGTTACGAGAGTAGGCTAGAGAAGAACTTTAAAGAGTTGGATAACTTCTATGACAAAGTGATTGAGCAGCATGCTACTGTTAATAATAATGATCATTCTAAGAGGCATGGAGTAATGGAGCAGCATGACGAAGATCTTGTTAATGTTCTTCTTCAACTCCAAAAGGATTCAAATCAAACGATCACCCTCAATGATGTACAAATCAAGGGTGTCCTAACAGACATTTTCATAGCAGGGACCGACACGGCATCCGCCACAATGATATGGACAATGTCGGAGCTAGTAAAGAACCCAGACAAAATGAAAATAGCACAAAAAGAGGTAAGAGAATTAGTACTCTTGAAGGAGAAAAAAGGTATGGTGGAAGAGAGTGACCTTCCAATGCTTCCATACCTAAAATCAGTGGTTAAGGAAGCACTGAGAATCCATCCTCCAGCACCACTTCTCGTCCCAAGAGAGACCATCCAACCTTGCACCATCAAAGGCTATGAAGTCCTCCCCGGAACGAGGGTCTTCATCAACGCCAAAGCCATAGCAATGGATCCAACTTGTTGGGAGAATCCAAACGAGTTCACTCCGGAGCGGTTCCTCCATAGTCCAATTGATTACTTCAAAAGGCAACAACACCTTGAGATGTTGCCCTTTGGAGCAGGACGGAGGGGCTGTCCTGGAGTGAACTTCGCCATGCCGTTGATTGAGCTTTCTCTAGCGAATCTTTTGCTTCGTTTTGATTGGAAACTGCCAAATGGAGTTGGAAAGGATCAAGTTGACATGCAAGAAGCAATTGGCCTTACAATGCACAAGAAATCTCCTCTTTGTCTCATACCCTCCCCCTTCTCTCCGTAA 1521 0.4444 MILCYALFVFLTLLFLILTFTKSDLKRNNLPPGPWRLPFIGNLHQVGELPHRSLQQLSSLYGPLMFLKLGSVPTLVVSSAEIAEEIFKNHDLAFSGRPKLYAANRLGYNGSAVTFTPYGDYWKEIRKIMMLELLSAKRVQSFQAVRLEEVQILLHSIALSGGTPVNLSQLTLSLTNNVVCRIAFGTRFGGPSSKFYEVLRETQELLGGFCLADFFPWLWWLNKFNGYESRLEKNFKELDNFYDKVIEQHATVNNNDHSKRHGVMEQHDEDLVNVLLQLQKDSNQTITLNDVQIKGVLTDIFIAGTDTASATMIWTMSELVKNPDKMKIAQKEVRELVLLKEKKGMVEESDLPMLPYLKSVVKEALRIHPPAPLLVPRETIQPCTIKGYEVLPGTRVFINAKAIAMDPTCWENPNEFTPERFLHSPIDYFKRQQHLEMLPFGAGRRGCPGVNFAMPLIELSLANLLLRFDWKLPNGVGKDQVDMQEAIGLTMHKKSPLCLIPSPFSP 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211683g00003 506 FunFam Cytochrome P450 99A2 20 502 - -
Stsc211683g00003 506 SUPERFAMILY Cytochrome P450 31 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211683g00003 506 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211683g00003 506 PRINTS P450 superfamily signature 303 320 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211683g00003 506 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211683g00003 506 PANTHER CYTOCHROME P450 71B11-RELATED 14 502 - -
Stsc211683g00003 506 Pfam Cytochrome P450 31 494 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211683g00003 506 PRINTS E-class P450 group I signature 58 77 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211683g00003 506 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211683g00003 506 PRINTS E-class P450 group I signature 82 103 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211683g00003 506 PRINTS E-class P450 group I signature 399 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211683g00003 506 PRINTS E-class P450 group I signature 312 338 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211683g00003 506 PRINTS E-class P450 group I signature 292 309 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211683g00003 506 PRINTS E-class P450 group I signature 358 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211683g00003 506 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211683g00003 506 PRINTS E-class P450 group I signature 174 192 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211683g00003 506 CDD CYP71-like 61 497 - -
Stsc211683g00003 506 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
Stsc211683g00003 506 Gene3D Cytochrome P450 21 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211683g00003 Stsc-Chr211683 18336 20443 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211683g00003 1 504 Cytochrome P450 AT3G26300 42.636 8.80e-140 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211683g00003 K20617 - gmx:100806157 623.624