Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211681g00007 ATGATTGATCAAAGTGGGTGGATGGTAATGATGGATCTCAACAAGGAATGGTCATGTGAGGAATTGAGTGAGAGCAAGAAGTGTTGCAGTGATTGCAAGACCACCAAGACTCCACTCTGGAGAGGAGGACCTGCTGGTCCTAAGACTCTATGCAACGCTTGCGGAATAAGGTACCGGAAGAGAAGGGCTTCCACGGTGGCAGTGAGCAAAGGACAAGAGAGGAAGAGAGAGAGATCACAAAATGGCGGTGGCAGCAGCAGCAGCTCCTCATCTGATGTTGATGATTTGAAGGAGTCGTTGAAAGTGAATTTGATGGCGTTGGGTGAGGAGTTTTGGTTGCAGCGCTCAGCAGCGACGTCGGTTCTGAAGAAGAAACAGAGGAGTATGTGTTTGTTGGGGGAAGAGGAACAAGCCGCTGTATGTTTAATGGCACTCTCTTCTGGTTATGTTTTTGCTTAA 459 0.4815 MIDQSGWMVMMDLNKEWSCEELSESKKCCSDCKTTKTPLWRGGPAGPKTLCNACGIRYRKRRASTVAVSKGQERKRERSQNGGGSSSSSSSDVDDLKESLKVNLMALGEEFWLQRSAATSVLKKKQRSMCLLGEEEQAAVCLMALSSGYVFA 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211681g00007 152 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 26 63 - -
Stsc211681g00007 152 MobiDBLite consensus disorder prediction 65 95 - -
Stsc211681g00007 152 SMART GATA_3 23 74 IPR000679 GO:0006355|GO:0043565
Stsc211681g00007 152 ProSiteProfiles GATA-type zinc finger domain profile. 23 78 IPR000679 GO:0006355|GO:0043565
Stsc211681g00007 152 PANTHER OS01G0976800 PROTEIN 19 151 - -
Stsc211681g00007 152 Gene3D - 24 85 IPR013088 GO:0006355|GO:0008270
Stsc211681g00007 152 MobiDBLite consensus disorder prediction 66 80 - -
Stsc211681g00007 152 Pfam GATA zinc finger 29 62 IPR000679 GO:0006355|GO:0043565
Stsc211681g00007 152 CDD ZnF_GATA 29 62 IPR000679 GO:0006355|GO:0043565
Stsc211681g00007 152 ProSitePatterns GATA-type zinc finger domain. 29 54 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211681g00007 Stsc-Chr211681 47671 48445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211681g00007 20 152 C2C2-Gata Transcription Factor Family AT3G06740 48.507 3.72e-31 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc211681g00007 GATA 2.3e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211681g00007 - - qsa:O6P43_011056 154.451