Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211681g00004 ATGAGCAGTATGGAAGAAAGCACAGGGTGGAAAATCCTTCAACCGTCCAGCTTAATTAGGGTTCAGATCTCTCACCCGCCTATCCTCCTCGCCGCACCGTTGTCGTCTCTTATCGGCGATCTAACCTCCGCCTCTGCAACTCCTTCTATCGATCTCCGTTTGGACCGCTGCGGAGGCCGCGAATCGAAGGAAACCACCGCCGACGCGAATCGAAGGCGACCACCGCTTGACGCGAATCAGAGACAGCTGCACTCCCTGCCGCTGCGAGCCTCAACTTCTGTCTGCCAATCTGTCGGCTGCGACTACCATGAACCCCGCCTATGTGTTGCGTTTTTGCCTGTGAATCCGCCATCAAGGATGGTAAGGGGAGGAAAAATTAGTGGCAAACGCAGCTTTAGGAATAGGGCTCGGTCAAAGGAAGGTGGTTCCGATGATTCCGATGAGGATTATGTGGTTTCAGATGAAGATGAAGAAGTGTCCGACTGTCCTGACGAATATAGCTCCTCTCTAGATGGATGTGCATCAGAGGAGAGTTATGATGCTTTTATAGACGAGGAGGAAGAAGATGATGAAATTCGGCAAGTGAAGAAATTCAATAGATCAGAGGCCAGGAATGGTGTTTGTGGTCGACAGAAAAATACAAGTAAAAGCACACGAAAGAGGGGAAGGATTGCATATGCAAAACATGAAGCACAAGAAGCACAGGAAGAACAAGAAGCTCAGGAAGAACAAGATCAGGAGCAACCAAAAGTAGAAGAACAAGATGGAAATGGAGGTGGAGGTGGAGGTGGAGATGGATATGAAGATGAAGATGAAGATGAAGATGAAGAGGGAGGTGAAGCCAGCGGGACAAAAAGGAGGAAAAAATTGCGTAGGCCAAGGAGAATGCTTCTACCTGAGGATTCCAATTCAGATGCATGTGGTGTCTTTTCTGGTTCCTCTGAGTATGAGTTTACTATCTCTGAAGAAGAAAGAGAACAGGTCAGAGAAGCCAAAGAATTGTGTCAAAGCTCTAGAAGGAATTTGAGGAGGTCTTCCCATTTAACGAAAAATGAAGAGATTGAATTGCTTGAAGATCTACACCAACGAAGGAAGCCTCAAGTTCAAAAGGGTAAGGAAAAGATGGATGAATCTCAAGGAAGAAAGGGTAAGGAAAAGGTAGAGGATTTAAAAAATGAGGTGGGAAAGCAGGTGTGTGGAGTTTGTTTGTCTGAGGAAAATAAAAGAAAAGTAAGAGGAGTACTAAATTGTTGTACTCACTACTTTTGCTTTACCTGTATTGTGGAGTGGGCAAAAGTGGAGACTCGGTGTCCTTTGTGTAAACAGAGATTCAGAACAATTACTAAGCCTGCAAGATCAACTGCAGGAGTTGATTTTAGTGAAGTGGTAGTAGAAGTGCCTGAACGTGACCAGGTTTACCAGCCCACCGAAGAAGAACTCAGGAGCTATATTGATCCATATGAGGATGTTATTTGTTCAGAGTGCCATCTAGGTGGTGATGATGCTCTCATGTTACTATGTGATATATGTGATTCCCCTGCACACACATACTGTGTTGGTTTGGGTCGGGAAGTACCTGAAGGTAATTGGTATTGTGATGGTTGCAGACCAGTTGCTTTGGCATCTTCAAGCTCTCAAGTTCAAGAACGTGTGACTGATCCAAGTGTCCCGACTCAAAACTTGTCTGTTAGACCATCAATTGTTCTTAATGAACGAGAAAGTATAGACCTCAACTTGATATCTTCACCCCGTACATCTCTCAGCCAAGGATTTGGGCATATTTCATCTGCTAGATTTTCTGGTAGAAGTGTTGAAGTAGCTTCTCAAGTACCTGGAGGAGGGGCACCAACTTTATCAGAAAGACGCTGGATACACCGACATATTCACCAGATACTTTCGACAGCTGGCAGAACCAATGGTTCTTCAGCTCCCAATACATCAAGTAACTTGCATAACTCTCAAACCGATCAAAGCAGGGAAACAAATGCAACACAGCATACAAGGACACAGGATGCTGGAACATCGTACCTCCCTTTCTTAGATGAGAGATTATTCAACAATATATCTCCATCAATGCAGAATGCAGATTCCTCCTCAACAAGAATTAGCAATGCAAGAAGGCCAGTTGTTCAGGATTCAGCTATGCTTGCCAACAGATCTGTGAATGGGGTGCTATTGCCTGTACTTGTAGCAACAACACCTTCTGTATCAGATTATGAACCAGTTCATCAGTTCAACAACAGAACTAACATGGTCACTGATGGTAGCTTGCCCGTTGCTATCAAAGAAGACAGTAACTTTGAAACCATAAAGCAGCAGTTGAAGTCTATGGTTAAAAGACACCTGCGGAGCTTATCTCGAGATGTTGATTTAGGGAATAATAGTACTTTCAAGGACATTGCAAGGAGTTCTACACACACAGTACTAGCTGCATGTGGTCTTGAGCACAAGAAGAGTGAGGTTCGCTCTGTGCCTGCACCAGAAGTCTGCCCCCACATTGAACTAATGGCAGGTGGACAAACTAGTTTGATAAGAGGTTGCTGCTCAACTTGCTTTGATTCTTTTGTAAAAGATGTGGTAAAAAATATTTTGGACAGAAGAATGTCCTCACAGTGGTTACGATTAGGTCTCTAG 2634 0.4438 MSSMEESTGWKILQPSSLIRVQISHPPILLAAPLSSLIGDLTSASATPSIDLRLDRCGGRESKETTADANRRRPPLDANQRQLHSLPLRASTSVCQSVGCDYHEPRLCVAFLPVNPPSRMVRGGKISGKRSFRNRARSKEGGSDDSDEDYVVSDEDEEVSDCPDEYSSSLDGCASEESYDAFIDEEEEDDEIRQVKKFNRSEARNGVCGRQKNTSKSTRKRGRIAYAKHEAQEAQEEQEAQEEQDQEQPKVEEQDGNGGGGGGGDGYEDEDEDEDEEGGEASGTKRRKKLRRPRRMLLPEDSNSDACGVFSGSSEYEFTISEEEREQVREAKELCQSSRRNLRRSSHLTKNEEIELLEDLHQRRKPQVQKGKEKMDESQGRKGKEKVEDLKNEVGKQVCGVCLSEENKRKVRGVLNCCTHYFCFTCIVEWAKVETRCPLCKQRFRTITKPARSTAGVDFSEVVVEVPERDQVYQPTEEELRSYIDPYEDVICSECHLGGDDALMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASSSSQVQERVTDPSVPTQNLSVRPSIVLNERESIDLNLISSPRTSLSQGFGHISSARFSGRSVEVASQVPGGGAPTLSERRWIHRHIHQILSTAGRTNGSSAPNTSSNLHNSQTDQSRETNATQHTRTQDAGTSYLPFLDERLFNNISPSMQNADSSSTRISNARRPVVQDSAMLANRSVNGVLLPVLVATTPSVSDYEPVHQFNNRTNMVTDGSLPVAIKEDSNFETIKQQLKSMVKRHLRSLSRDVDLGNNSTFKDIARSSTHTVLAACGLEHKKSEVRSVPAPEVCPHIELMAGGQTSLIRGCCSTCFDSFVKDVVKNILDRRMSSQWLRLGL 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211681g00004 877 Coils Coil 224 248 - -
Stsc211681g00004 877 MobiDBLite consensus disorder prediction 147 164 - -
Stsc211681g00004 877 MobiDBLite consensus disorder prediction 56 84 - -
Stsc211681g00004 877 MobiDBLite consensus disorder prediction 634 674 - -
Stsc211681g00004 877 SMART ring_2 399 440 IPR001841 -
Stsc211681g00004 877 ProSiteProfiles Zinc finger RING-type profile. 399 441 IPR001841 -
Stsc211681g00004 877 Pfam PHD-finger 491 537 IPR019787 -
Stsc211681g00004 877 ProSitePatterns Zinc finger RING-type signature. 418 427 IPR017907 -
Stsc211681g00004 877 PANTHER F18C1.6 PROTEIN 120 867 - -
Stsc211681g00004 877 SMART PHD_3 491 536 IPR001965 -
Stsc211681g00004 877 MobiDBLite consensus disorder prediction 119 311 - -
Stsc211681g00004 877 CDD RING-HC_Topors 397 444 - -
Stsc211681g00004 877 Pfam Ring finger domain 398 441 IPR001841 -
Stsc211681g00004 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 539 IPR013083 -
Stsc211681g00004 877 SUPERFAMILY RING/U-box 398 447 - -
Stsc211681g00004 877 MobiDBLite consensus disorder prediction 56 78 - -
Stsc211681g00004 877 MobiDBLite consensus disorder prediction 634 675 - -
Stsc211681g00004 877 SUPERFAMILY FYVE/PHD zinc finger 461 537 IPR011011 -
Stsc211681g00004 877 MobiDBLite consensus disorder prediction 361 387 - -
Stsc211681g00004 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 374 462 IPR013083 -
Stsc211681g00004 877 Coils Coil 321 341 - -
Stsc211681g00004 877 ProSiteProfiles Zinc finger PHD-type profile. 489 538 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211681g00004 Stsc-Chr211681 32106 37275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211681g00004 486 535 C2H2 Transcription Factor Family AT3G01460 46.154 5.71e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc211681g00004 PHD 4.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211681g00004 - - ahf:112695571 1041.95