Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211681g00003 ATGAGTACTGAGGAGGAAGTTGCGCCAATCAATACTGTTTCTGTTGTTGAAGACATTCTTCAGAAGCGTGGAGGCCTCTTCGACGACAAGTTGGCGTCACGCCGAGACGAAGAAGCTTCGGCGAGAAGAAATGAAGCTACTGAATGGATGCGTAAGACGCTTGGAGTGGTGGCAGGGAGAGACTTGCCTGCGGAGCCTTCTGAAGAAGACTTCAGGCTCGCCTTGCGTACCGGCATCATCCTCTGCAATGTTCTCAACAAAATTGTACCCAATACAGTTCCCAAGGTAATTCAAGCTCCGAAAGATTCTCCTATAGTTCCTGATGGAACAGCGCCGTCTGTCGTTCAGTACGTTGAAAATGTAAAGAATTTTATTGAAGCTTTGGGAGGATTGGGGATTCCCACCTTTGAAGCTTCCGATCTGGAAAAGGGCGGAAATTTAACAAGGGTGGTGAGTTGCTTGTTAGAGCTCAAGTGCTATGCAGAATGGGTACAGGGAGGGAAAATTGGGTCATGGAAATTAGATGGCCTTCCAAATTCAAAGCCACCCTTGATGAAAACGCTTCTAAGGAGAAACTCAGAACCATCCATGATGAAATCCATGGGGAACTCATTAGAGGACAAAGCAGATACCACTTGTGCTGCTATTGTCAATAATCCTAAGGCTGACCTCACCGAAATGAATTCCAACTATCCTTCTTTACTTTCACTGGTTCGTGAACATTTGTCAAATAAGAGGACAGAGGAAATTCCTTATGTTGTGGAGTCCCTGCTTACTAAAGTCATGAATGAATTTGAACACCGGTTGCTTGAACAACAAGAAAGGCTTAGAACAATTCAACTTGGAAAAGCATCATCGTTTAATAAGCTAGAGGAATATCGATTGCCTGAACAACAACAAAGGGTACAGCAGCTTAGACCAATTCAGCAAGAAAGAACATTATCAGCCAGACCAGATGAACATCAATTGCTTGAACAACAAAAAATGCATATTAGAGCAAGTGAACAAGATAAAGCACCATCATCTAAACCAGATGAACATCGATTGCTTGGACAACAAGAAACGCAGTTTAGAGCAATTCAAACAGATAAATTATCATCATCTAAACCAGGACCTTTGGTTTCAAAAGCTACTCCTGTCGACGAAGAGGAACTGAAAACTATAGTCCATCAAACTAAATCAGGGGTGCTAGTTATGCACAAGAAGTACCAGGAAGAGTACCTCATTCTATGCAAGCATGTGCGCAGCTTGGTTTCTGCAGCTTCAGGATATCAAAAAGTTCTTGAAGAGAATCGTAAATTATACAATCAAGTGCAGGATCTAAAAGGGAATATTAGGGTGTACTGCAGAGTTAGACCCTTCTTGGGCGCTCCTTCACCCACTAACAGTGTTGGTGCCATTGATGATGGAAGTATCTCAATCATAACACCTTCAAATTATGGGAAAGATGGGAGGAAGACATTCAATTTTAACAAATGTTTTGGTCCTACTGCAACACAAAGTTGGTCCTTTCATTGTTCTGGGCCAGATGACCTTACAGAGGACACCATGGGTGTCAACTACCGTGCGCTGAATGATCTTTTCCAAATCCAAGAACAGAGGAAAGACACCATTATCTATGAGATTGGTGTTCAAATGCTTGAGATTTACAATGAGCAACTCACATTAGAAATTCGCAACAAAACCACGAATGGCATCAATGTGCCCGAAGCCAACCTTGTTCCTGTTGCAACAACTGCTGATGTCATAAACTTGATGAACTTGGGAAACAAGAATCGAGCTGTTGGTTCTACTGCCATGAACTCTCGTAGTAGCCGTTCTCACAGTTGCCTAACAGTTCATGTTCAAGGAAAGTACGTGACATCACCTAAAACCATTCATGCTAGTCTGCATCTTGTTGATCTAGCAGGAAGTGAGAGGGCTGATAAAACTGAGGCTACAGGAGATAGGCTTAAGGAAGCTCAATACATCAATAAGTCCCTTTCTGCCTTAGGAGATGTTATCGCTTCCCTTGCCGCGAAGAGTTCCCATGTTCCCTACAGGAACAGTAAACTCACCCAACTGCTTCAAGATTCTCTTGGTGGGCAAGCAAAGACACTAATGTTTGTTCATATTAGTCCCGAGCCTGATGCAGTTGGAGAAACACTTAGTACACTTAAGTTTGCTGAACGTGTTGCCACTGTGGAACTTGGTGCTGCTAAGGCTAATGATGGTAAAGGTAATAATAGTGGTGGTGGCGGCGGCGGCGGCGGTGCAGATGTGAAAGATCTCAAAGATCAGATTGCTAGCTTGAAGGCAGCCTTAGCTAGGAAAGATGCAGAACTAGAAAGCTACGAAGCAGGAAAGATTAAGTCTCATGGCTCTACTCCTTCACTTCGTAGCTTGGGTTCTACTGGAGGTGCTAGGAAGTTACCAAGAGATGATTCTTCTAACTTAGATGGGCAAAACCAGGATGAATCAAAGGTGAAAAGAAGAAGCTTAGATTACACAGACATGGATGAAGATAACTGGGCGGATGACAGCAATAGTAATAAGATAGCAATGGCGATGAAGAGGAATGATAGCTTAACTAGTAATGACAGCCTTGTGGCACAATGGGAAGCAGATAACAAACAATATTCTCCATCTTCCAGTCCCACTTCTTATAATGATTATGATGAGATTGAAATGGCAACTAATGATTCTGAGGCATCAGAAATGAATTGGCAACCACAACAAGCAGCTAAACCAACCTCCGCTCCTTCATCAGGCCTTAAACCAAAGAAACCAACTACTACTGCTCTGAAATCAACAAAGCCGGAAACCAGGAGTCCGGGATCATCCGCTCCTTCACCAGCAGCAAGGAAACCAGCAGCAGCAGCAGGTAGTCAAGTAAGAAAGGCTGCAGGAACTGATGTAAAGAAAAGAGTTGGGGGCAAGTGA 2922 0.4339 MSTEEEVAPINTVSVVEDILQKRGGLFDDKLASRRDEEASARRNEATEWMRKTLGVVAGRDLPAEPSEEDFRLALRTGIILCNVLNKIVPNTVPKVIQAPKDSPIVPDGTAPSVVQYVENVKNFIEALGGLGIPTFEASDLEKGGNLTRVVSCLLELKCYAEWVQGGKIGSWKLDGLPNSKPPLMKTLLRRNSEPSMMKSMGNSLEDKADTTCAAIVNNPKADLTEMNSNYPSLLSLVREHLSNKRTEEIPYVVESLLTKVMNEFEHRLLEQQERLRTIQLGKASSFNKLEEYRLPEQQQRVQQLRPIQQERTLSARPDEHQLLEQQKMHIRASEQDKAPSSKPDEHRLLGQQETQFRAIQTDKLSSSKPGPLVSKATPVDEEELKTIVHQTKSGVLVMHKKYQEEYLILCKHVRSLVSAASGYQKVLEENRKLYNQVQDLKGNIRVYCRVRPFLGAPSPTNSVGAIDDGSISIITPSNYGKDGRKTFNFNKCFGPTATQSWSFHCSGPDDLTEDTMGVNYRALNDLFQIQEQRKDTIIYEIGVQMLEIYNEQLTLEIRNKTTNGINVPEANLVPVATTADVINLMNLGNKNRAVGSTAMNSRSSRSHSCLTVHVQGKYVTSPKTIHASLHLVDLAGSERADKTEATGDRLKEAQYINKSLSALGDVIASLAAKSSHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEPDAVGETLSTLKFAERVATVELGAAKANDGKGNNSGGGGGGGGADVKDLKDQIASLKAALARKDAELESYEAGKIKSHGSTPSLRSLGSTGGARKLPRDDSSNLDGQNQDESKVKRRSLDYTDMDEDNWADDSNSNKIAMAMKRNDSLTSNDSLVAQWEADNKQYSPSSSPTSYNDYDEIEMATNDSEASEMNWQPQQAAKPTSAPSSGLKPKKPTTTALKSTKPETRSPGSSAPSPAARKPAAAAGSQVRKAAGTDVKKRVGGK 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211681g00003 973 SMART ch_5 42 157 IPR001715 GO:0005515
Stsc211681g00003 973 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 444 776 IPR027417 -
Stsc211681g00003 973 Gene3D Kinesin motor domain 507 727 IPR036961 -
Stsc211681g00003 973 SUPERFAMILY Calponin-homology domain, CH-domain 33 169 IPR036872 -
Stsc211681g00003 973 MobiDBLite consensus disorder prediction 806 832 - -
Stsc211681g00003 973 ProSitePatterns Kinesin motor domain signature. 628 639 IPR019821 GO:0003777|GO:0005524|GO:0007018
Stsc211681g00003 973 MobiDBLite consensus disorder prediction 867 973 - -
Stsc211681g00003 973 ProSiteProfiles Kinesin motor domain profile. 444 501 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc211681g00003 973 SMART kinesin_4 442 736 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc211681g00003 973 Pfam Microtubule binding 429 501 IPR031852 GO:0008017
Stsc211681g00003 973 MobiDBLite consensus disorder prediction 867 942 - -
Stsc211681g00003 973 Gene3D Kinesin motor domain 389 506 IPR036961 -
Stsc211681g00003 973 ProSiteProfiles Kinesin motor domain profile. 507 728 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc211681g00003 973 Coils Coil 754 781 - -
Stsc211681g00003 973 PRINTS Kinesin heavy chain signature 678 699 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc211681g00003 973 PRINTS Kinesin heavy chain signature 598 615 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc211681g00003 973 PRINTS Kinesin heavy chain signature 629 647 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc211681g00003 973 MobiDBLite consensus disorder prediction 781 843 - -
Stsc211681g00003 973 PANTHER KINESIN-LIKE PROTEIN KLP-3 509 917 IPR027640 GO:0003777|GO:0007018
Stsc211681g00003 973 Pfam Calponin homology (CH) domain 42 161 IPR001715 GO:0005515
Stsc211681g00003 973 Gene3D - 32 163 IPR036872 -
Stsc211681g00003 973 Pfam Kinesin motor domain 513 727 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc211681g00003 973 ProSiteProfiles Calponin homology (CH) domain profile. 40 162 IPR001715 GO:0005515
Stsc211681g00003 973 CDD CH_AtKIN14-like 42 158 - -
Stsc211681g00003 973 Coils Coil 424 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211681g00003 Stsc-Chr211681 23171 29374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211681g00003 432 728 Calmodulin-binding Proteins AT5G65930 32.853 6.15e-48 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211681g00003 K10406 - gmx:100799535 887.871