Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211680g00006 ATGGAGTTTCAGGTGGTCCTTCAAAACGGTATCGTTTCCATCACTATAGCAAAGCCTGGGGGGTATATCCTTGGAATATCATATAATGGAATTGACAACGTACTTGAAGCTCGAAATGACAAAGACGATAGAGGGTACGTGGACTTTGTTTCAAATGAACCAGGAAAATCTGGCGCCGAACCAAAAATCGAGATGACAGATTTTAAAGTGATATCAGAGGACCAGAATATGGCGGAGGTTTCATTTACGAGAACATGGTCATCTTCAGGAAGGGGTGTCCCCTTCAATATAGACATAAGGTATATATTGAGAAGAGGTGATTCTGGGTTTTATCCGTACATAATAGTGGAACGCCTAGATGGATTTCCTGCGGTGGAAATTGATCAAATTAGGATTGTTTTCAAGCTCGCCACTCACGGGTTCCACTATATGGCTATAACAAACACAAGGCAGAGGTTGATGCCATCTATGAGAGATAGAGAAAGTGGTCAAACCCTAGATTATCCTGAAGCCGTTCGCTTAACCAGGCCATTAGAACGAGAATTTGATGGAGAGGTGGATGACAAGTACCAATACTCGATTGAGAATGAAGACAACAAGGTTAATGGCTGGATTAGCCCAGATTCTGCACCACGTGTCGGTTTCTGGGTCTTAACACCAAGTAATGAGTTCCGTAATTGTGGGCCTCTTAAGCAAGATCTCACCTCTCATACTGGCCCATTTGCCCTCTCTATGTTTGTGAGCAACCACTATGCGGGTAAGGAGGTAAATATGAAATTTGAGAAAGGGGAGCTTTATAAAAAGGTTTTCGGCCCTGTTTTTATCTACCTCAACTCTGGTTCAACTAATCAACAATTGTGGTCAGATGCCGTACAAAAGCAATCTAATGAAGCCAAATCATGGCCATACAATTTCCCTCGATCAATCAATTTCATTCAAGCCAATAAACGTGGAACCGTATCAGGAAGGTTGCAAGTCCAAGATAGGTTCATCAAAGAACAGGGCCCTCAAAATGCTAACAATGCGTACGTTGGTTTAGCTTTACCTGGAGATCCCGGATCATGGCAGAAAGAAAGCAAGGGTTATCAATTTTGGACTCGAACCGACAAGAATGGTAATTTTGTAATTAACAATATTGTACCCGGTAATTACAATTTGTATGCATGGGTTCCAGGTTTTATTGGAGACTACAAATACAATAATACAATAACCATCACCCCAGGAGGGTCCATGAACTTGAAGACAATTGTGTATAATCCTCCAAGAAATGGTCCAACACTTTGGGAGATTGGAATTCCTGATCGCTTAGCTGCTGAGTTTTTTGTGCCAGACGCTAGCCCTAAGTTCACTAACAACTTATACAGAAATGATAAGGCTAACAAATTCAGGCAATATGGATTGTGGGAACGTTATGCCGAGTTACACCCAAATAATGATCTTGTATTCACTGTGGGTGCTAATGACTATAGCAAGGATTGGTATTTTGCTCACGTTACAAGGAAAACAGGAATGAAGAGATATGTACCAACCACGTGGCAAATTGTATTTGAGCTTCCAAATGTGATATCCGGAAGAATGTACACACTACAAGTGGCTTTGGCATCCTCAACTGAAGCTGATTTGCAGGTTTGGTTCAATGATCCTAAGAATGCAGATCCTCCACACTTTGCAACAGGGCAAATAGGAGATGACAATGCCATAGCAAGGCATGGCATTCATGGATTGTATAGTCTCCTTAGCATAAGTGTAAGCGGGAAGCGTTTGGTGAAAGGAAACAACACTATCTACTTGAAGCAATCAAAAGCTACAACTCCTTTTGAAGGATTCATGTATGATTATATCCGCTTAGAAGCTCCTCCACTTCTATCTCCTTCCTTTGATCACTAA 1887 0.4149 MEFQVVLQNGIVSITIAKPGGYILGISYNGIDNVLEARNDKDDRGYVDFVSNEPGKSGAEPKIEMTDFKVISEDQNMAEVSFTRTWSSSGRGVPFNIDIRYILRRGDSGFYPYIIVERLDGFPAVEIDQIRIVFKLATHGFHYMAITNTRQRLMPSMRDRESGQTLDYPEAVRLTRPLEREFDGEVDDKYQYSIENEDNKVNGWISPDSAPRVGFWVLTPSNEFRNCGPLKQDLTSHTGPFALSMFVSNHYAGKEVNMKFEKGELYKKVFGPVFIYLNSGSTNQQLWSDAVQKQSNEAKSWPYNFPRSINFIQANKRGTVSGRLQVQDRFIKEQGPQNANNAYVGLALPGDPGSWQKESKGYQFWTRTDKNGNFVINNIVPGNYNLYAWVPGFIGDYKYNNTITITPGGSMNLKTIVYNPPRNGPTLWEIGIPDRLAAEFFVPDASPKFTNNLYRNDKANKFRQYGLWERYAELHPNNDLVFTVGANDYSKDWYFAHVTRKTGMKRYVPTTWQIVFELPNVISGRMYTLQVALASSTEADLQVWFNDPKNADPPHFATGQIGDDNAIARHGIHGLYSLLSISVSGKRLVKGNNTIYLKQSKATTPFEGFMYDYIRLEAPPLLSPSFDH 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211680g00006 628 Gene3D - 424 617 - -
Stsc211680g00006 628 SUPERFAMILY Galactose-binding domain-like 423 617 IPR008979 -
Stsc211680g00006 628 CDD RGL4_N 4 286 - -
Stsc211680g00006 628 CDD RGL4_C 428 617 - -
Stsc211680g00006 628 Gene3D - 2 292 IPR014718 GO:0030246
Stsc211680g00006 628 Pfam Polysaccharide lyase family 4, domain III 426 616 IPR029411 -
Stsc211680g00006 628 SUPERFAMILY Galactose mutarotase-like 11 283 IPR011013 GO:0003824|GO:0005975|GO:0030246
Stsc211680g00006 628 FunFam Rhamnogalacturonate lyase B 313 413 - -
Stsc211680g00006 628 Gene3D - 312 415 - -
Stsc211680g00006 628 SUPERFAMILY Starch-binding domain-like 314 415 IPR013784 GO:0030246
Stsc211680g00006 628 Pfam Polysaccharide lyase family 4, domain II 340 412 IPR029413 -
Stsc211680g00006 628 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 5 620 - -
Stsc211680g00006 628 Pfam Rhamnogalacturonate lyase family 4 186 IPR010325 -
Stsc211680g00006 628 CDD RGL4_M 316 416 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211680g00006 Stsc-Chr211680 9851 13838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211680g00006 4 619 Polysaccharide Lyase AT1G09890 54.167 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211680g00006 K18195 - gmx:100776664 848.195