Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211680g00003 ATGGCGTCACAACCAGAGACCGAGCATCCAAACAAGGCTTTCGGATGGGCAGCTAGGGACCCTTCTGGCCTTCTTTCCCCTTTCAACTTCTCCAGAAGGGCAACTGGAGAACAAGATGTGACATTCAAAGTCATGTATTGTGGAATATGTCACTCTGATCTTCACATGTTGAAGAATGAATGGGGAAATACCACTTTTCCTATAGTACCTGGGCATGAGGTTGCTGGAGTAGTGACAGAGGTAGGAAGCAAGGTACAAAATTTCAAAGTTGGAGACAAAGTTGGAGTGGGAGTGATGGTTGCATCCTGCAAATCATGCGAGAGCTGTGCCGGTAATCTTGAGAATTTCTGTCCACAAATGGTCCTCACATACAGTGCCAAGAACAAAGATGGCACCATCACCTACGGCGGCTACTCTGACTCAATGGTCATCGACGAAGCCTTCGCCATCCGCATCCCGGATAACCTTTCTCTTGATGTAGCTGCTCCTTTGCTTTGTGCCGGAATCACGGTGTATAGCCCTCTCCGGTATTTCGGACTTGACAAGCCTGGTTTGCATGTTGGTGTGGTTGGTCTTGGTGGTCTCGGCCATGTGGCTGTCAAGTTTGCCAAAGCTTTTGGTTGTAAAGTAACGGTTATTAGTACTTCTCCTAACAAAAAGAAAGAAGCCATTGAAAGTTTAGGAGCAGATTCGTTTCTTGTAAGTAGAGATCAAGATCAGATGAAGGTATGTACATGA 738 0.4634 MASQPETEHPNKAFGWAARDPSGLLSPFNFSRRATGEQDVTFKVMYCGICHSDLHMLKNEWGNTTFPIVPGHEVAGVVTEVGSKVQNFKVGDKVGVGVMVASCKSCESCAGNLENFCPQMVLTYSAKNKDGTITYGGYSDSMVIDEAFAIRIPDNLSLDVAAPLLCAGITVYSPLRYFGLDKPGLHVGVVGLGGLGHVAVKFAKAFGCKVTVISTSPNKKKEAIESLGADSFLVSRDQDQMKVCT 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211680g00003 245 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Stsc211680g00003 245 Gene3D - 167 243 - -
Stsc211680g00003 245 Gene3D - 16 166 - -
Stsc211680g00003 245 FunFam Cinnamyl alcohol dehydrogenase 167 245 - -
Stsc211680g00003 245 Pfam Zinc-binding dehydrogenase 194 236 IPR013149 -
Stsc211680g00003 245 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 242 IPR036291 -
Stsc211680g00003 245 SUPERFAMILY GroES-like 19 184 IPR011032 -
Stsc211680g00003 245 FunFam Uncharacterized protein 16 166 - -
Stsc211680g00003 245 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Stsc211680g00003 245 PANTHER ALDEHYDE REDUCTASE 5 242 IPR047109 GO:0016616
Stsc211680g00003 245 CDD CAD1 14 242 IPR047109 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211680g00003 Stsc-Chr211680 2229 4589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211680g00003 11 242 Monolignol Biosynthesis Gene Families AT4G37980 71.121 4.30e-115 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211680g00003 K23232 - qsa:O6P43_025194 404.831