Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211680g00002 ATGGCGTCACAACCAGAGACCGAGCATCCAAACAAGGCTTTCGGATGGGCAGCTAGGGACCCTTCTGGCCTTCTTTCCCCTTTCAACTTCTCCAGAAGGGCAACTGGAGAACAAGATGTGACATTCAAAGTCATGTATTGTGGAATATGTCACTCTGATCTTCACATGTTGAAGAATGAATGGGGAAATACCACTTTTCCTATAGTACCTGGGCATGAGGTTGCTGGAGTAGTGACAGAGGTAGGAAGCAAGGTACAAAATTTCAAAGTTGGAGACAAAGTTGGAGTGGGAGTGATGGTTGCATCCTGCAAATCATGCGAGAGCTGTGCCGGTAATCTTGAGAATTTCTGTCCACAAATGGTCCTCACATACAGTGCCAAGAACAAAGATGGCACCATCACCTACGGCGGCTACTCTGACTCAATGGTCATCGACGAAGCCTTCGCCATCCGCATCCCGGATAACCTTTCTCTTGATGTAGCTGCTCCTTTGCTTTGTGCCGGAATCACGGTGTATAGCCCTCTCCGGTATTTCGGACTTGACAAGCCTGGTTTGCATGTTGGTGTGGTTGGTCTTGGTGGTCTCGGCCATGTGGCTGTCAAGTTTGCCAAAGCTTTTGGTTGTAAAGTAACGGTTATTAGTACTTCTCCTAACAAAAAGAAAGAAGCCATTGAAAGTTTAGGAGCAGATTCGTTTCTTGTAAGTAGAGATCAAGATCAGATGAAGAAAAACCTCTGGAGTTGCCAATATTTTCACTTACTACTGGAAGAAAGTCGATAG 780 0.459 MASQPETEHPNKAFGWAARDPSGLLSPFNFSRRATGEQDVTFKVMYCGICHSDLHMLKNEWGNTTFPIVPGHEVAGVVTEVGSKVQNFKVGDKVGVGVMVASCKSCESCAGNLENFCPQMVLTYSAKNKDGTITYGGYSDSMVIDEAFAIRIPDNLSLDVAAPLLCAGITVYSPLRYFGLDKPGLHVGVVGLGGLGHVAVKFAKAFGCKVTVISTSPNKKKEAIESLGADSFLVSRDQDQMKKNLWSCQYFHLLLEESR 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211680g00002 259 CDD CAD1 14 244 IPR047109 GO:0016616
Stsc211680g00002 259 FunFam Uncharacterized protein 16 166 - -
Stsc211680g00002 259 SMART PKS_ER_names_mod 23 255 IPR020843 GO:0016491
Stsc211680g00002 259 PANTHER ALDEHYDE REDUCTASE 5 244 IPR047109 GO:0016616
Stsc211680g00002 259 Gene3D - 16 166 - -
Stsc211680g00002 259 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Stsc211680g00002 259 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Stsc211680g00002 259 SUPERFAMILY GroES-like 19 184 IPR011032 -
Stsc211680g00002 259 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 245 IPR036291 -
Stsc211680g00002 259 Pfam Zinc-binding dehydrogenase 194 247 IPR013149 -
Stsc211680g00002 259 Gene3D - 167 248 - -
Stsc211680g00002 259 FunFam Cinnamyl alcohol dehydrogenase 167 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211680g00002 Stsc-Chr211680 2229 5882 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211680g00002 11 247 Monolignol Biosynthesis Gene Families AT4G37980 69.620 4.37e-115 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211680g00002 K23232 - qsa:O6P43_025194 404.831