Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211680g00001 ATGGCGTCACAACCAGAGACCGAGCATCCAAACAAGGCTTTCGGATGGGCAGCTAGGGACCCTTCTGGCCTTCTTTCCCCTTTCAACTTCTCCAGAAGGGCAACTGGAGAACAAGATGTGACATTCAAAGTCATGTATTGTGGAATATGTCACTCTGATCTTCACATGTTGAAGAATGAATGGGGAAATACCACTTTTCCTATAGTACCTGGGCATGAGGTTGCTGGAGTAGTGACAGAGGTAGGAAGCAAGGTACAAAATTTCAAAGTTGGAGACAAAGTTGGAGTGGGAGTGATGGTTGCATCCTGCAAATCATGCGAGAGCTGTGCCGGTAATCTTGAGAATTTCTGTCCACAAATGGTCCTCACATACAGTGCCAAGAACAAAGATGGCACCATCACCTACGGCGGCTACTCTGACTCAATGGTCATCGACGAAGCCTTCGCCATCCGCATCCCGGATAACCTTTCTCTTGATGTAGCTGCTCCTTTGCTTTGTGCCGGAATCACGGTGTATAGCCCTCTCCGGTATTTCGGACTTGACAAGCCTGGTTTGCATGTTGGTGTGGTTGGTCTTGGTGGTCTCGGCCATGTGGCTGTCAAGTTTGCCAAAGCTTTTGGTTGTAAAGTAACGGTTATTAGTACTTCTCCTAACAAAAAGAAAGAAGCCATTGAAAGTTTAGGAGCAGATTCGTTTCTTGTAAGTAGAGATCAAGATCAGATGAAGGGTGCAGTCTATTTAATTGGTGTTTTTATTTTGGCTCTATTGAAGACTAATGGAAAACTTGTAATGGTTGGTTTACCAGAAAAACCTCTGGAGTTGCCAATATTTTCACTTACTACTGGAAGAAAGTCGATAGCTGGTAGTTCTATTGGAGGAATAAAAGAGACACAAGAAATGATTGATTTTGCTGCTAAGCATAACGTGAAACCTGACATTGAAGTTATTGCAATGGATTATGTAAACACAGCCATGGAGCGCCTCGTTAAAGCAGATGTCAAGTATCGTTTTGTTATTGATGTTGGAAACACTCTCAAATCAACCTCTTAA 1050 0.4343 MASQPETEHPNKAFGWAARDPSGLLSPFNFSRRATGEQDVTFKVMYCGICHSDLHMLKNEWGNTTFPIVPGHEVAGVVTEVGSKVQNFKVGDKVGVGVMVASCKSCESCAGNLENFCPQMVLTYSAKNKDGTITYGGYSDSMVIDEAFAIRIPDNLSLDVAAPLLCAGITVYSPLRYFGLDKPGLHVGVVGLGGLGHVAVKFAKAFGCKVTVISTSPNKKKEAIESLGADSFLVSRDQDQMKGAVYLIGVFILALLKTNGKLVMVGLPEKPLELPIFSLTTGRKSIAGSSIGGIKETQEMIDFAAKHNVKPDIEVIAMDYVNTAMERLVKADVKYRFVIDVGNTLKSTS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211680g00001 349 CDD CAD1 14 340 IPR047109 GO:0016616
Stsc211680g00001 349 Gene3D - 16 341 - -
Stsc211680g00001 349 SMART PKS_ER_names_mod 23 339 IPR020843 GO:0016491
Stsc211680g00001 349 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 310 IPR036291 -
Stsc211680g00001 349 PANTHER ALDEHYDE REDUCTASE 5 344 IPR047109 GO:0016616
Stsc211680g00001 349 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Stsc211680g00001 349 FunFam Uncharacterized protein 16 166 - -
Stsc211680g00001 349 FunFam Putative cinnamyl alcohol dehydrogenase 6 312 341 - -
Stsc211680g00001 349 SUPERFAMILY GroES-like 19 184 IPR011032 -
Stsc211680g00001 349 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Stsc211680g00001 349 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 178 224 IPR006140 GO:0051287
Stsc211680g00001 349 FunFam Cinnamyl alcohol dehydrogenase 167 311 - -
Stsc211680g00001 349 Gene3D - 167 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211680g00001 Stsc-Chr211680 1943 5882 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211680g00001 12 346 Monolignol Biosynthesis Gene Families AT4G37990 66.282 7.42e-158 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211680g00001 K23232 - qsa:O6P43_025194 551.592