Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211679g00004 ATGAATTCACATAATCCAACTTACATCACAGATACAAATATTTTGCTTCTTCTTCCTATAATAATCACCTTGATCCTTTTCACGTCTCTTTCAGAAATTCAAGCTGCCAAAACTCCTCAAAATGCAAGTGTTGGTGTTGTCATTGATGTCAATTCTGATACCGGAAAACAACAGAGAAGAGCCATGGAGATTGCAGCTCAAACTTTCAATAACCATTTAAAGACTCATAACATAGTTCTTTCATTCCTTGACTCTGGCAGTAACCCTTTACAAGCAGCTTCAGCTGCTGAAGAACTAATTACTAAGAAGAAAGTTGAAGTCATTATTGGCATGGAGACATGGCAGGAAGCAGCTCTAGTTGCTGATCTTGGAGCTAAAGCTCAAGTACCAGTGATTTCATTCTCTTCTCCACCTATAGTCCCTCCATTAATGCAAACTCGTTGGCCTTTCTTGATTCAAATGGCTGAAAATCACACTGCACATATGAACTGCATAGCAGATATCATCCATTCATACAACTGGCAGAAGGTTGTAGCAATATATGAGGATGACTCTTATAGCAGCTATTCCGGTATCTTAAGCCTCTTATCCGAGTCTCTAAACAAGGTTGATTCCGAGATTGAGTACCAACTTGTTCTTCCCCCATTTACTTCTTTAACTGATCCAAAAGGGGTTGTTCTTGATGAATTGCTTAAGCTATTGCAATTAAAATCTCGGGTTTTCATTGTTCTTCAAGCATCATTACCTATGGTGACACATTTGTTCAGAGAAGCAAAGAAAATTGGATTGATGGGAAAAGATTCAGCTTGGATAATCAATGAAGGGATCACTAGTACATTTGATTCTTACAACACAACCGCTTTATCCTCTATGGAGGGTACTTTGGGAATCAAAACCTACTATTCTACAAGCTCTAGTGCTTTCACTCAGTTTCAAGAGAATTTCCAAGGTGAAACATCTAAACCAGGATTATATGCACTAAGAGCCTATGATAGCATTACAATAATTGCAAAAGCCTTGGAGAACATGAATGCTAACTCTAGCAACTCAAGAGTGTTCATGGAGAAAATGTTGTCTAGTAATTTTGATGGCTTAAGTGGGAGAATAAGTTTCAGAGAAAGCCATTTATCCTACACTCCAATAATGAGAGTCATAAATGTGGTTAACAAGAGATACACAGAATTGGACTTTTGGACCCCAGAATTGAAGTTTTCAAGATCTCTTAAAATACTGGAAGACATAAAGAAAAGAGGTGATCTTGGTACAAGAAACATAACTGGCACAGTGGTTTGGCCTGGAGGCCTAAATTCTCTTGTTCATATTCCTATGGGATGGAAGTTACCAACAGATACAAACCCTTTAAAAGTTGCAGTTCCTGTAAACCCACTTTTTGAAAACTTTGTAAAGGAAGTATCCCAAAATCAATATCAAGGTTTCTGTATTGATCTTTTCTACTCTACAAGAGAAATTCTGAGTGACAACTATGGTGGCCTATTGCCCTATGAATTTCATGCCTTCAATGAATCCTATGACAGTTTATTTCAGAATCTCATAAATGAGTCCTATGATGCTATAGTGGGAGATGTGACAATACTTGCAAATCGATCGAAGTATGTTTCATTCACTCAACCATACACTGAGTCAGGTTTATCACTCATTCTTCCAGTAGAGTCTGAAGGGCAAGCATGGTTGTTTTTGAAACCATTTAGCTGGCAAATGTGGGTAGCAACATGTAGCATCCTCGTCTACACAATGTTTGTTGTCTGGTTCTTAGAGCATAGACTGAATCCAGAATTTGGTGGACCATTGAAAACTCAGATCAGCACCACACTGTGGTTTGCTTTTTCTTCTCTATATTTTGCTCACAAAGAGAAAATAAACAGCAACTCTGCAAGAGTAGTAGTTGGTGTGTGGCTATTTCTTGTGTTTGTTCTAACATCAAGCTACACTGCAAGCCTTTCTTCAATGCTCACTGTTACAAAGTTGAAATCTGGAAGAGATATTGATTGGCTGAGGCAAAATAATTTACCAGTTGGATGTGACAATGTCAGTACCTTTGTAAAGGACTACATGATCAATGTATATAAATTACATCCAGAGAAAATTATAGGTGTTAATGATGAGAATGACATTGTGGAAAAATTCAAGACCAAACAAATTGTTGCTCTATTTCTTGAGAGTCCATATGAGAAGGTTTTCTTGAATAAGTATTGCAACCAATATTCTTCAACCACAGCTGCATATAGATTTGGAGGAATGGGCTTTGTATTCCAAAAAGGATCACCAATGGCAAAGGACTTCTCTGAAGCAATTTTAACACTAGCAGAAGATGGAACACTAAAGAAATTGGAAGATGAATGGTTGACACCATCCAATGAATGCTCAAACACATCATCACCCGAAACAGAGAGCCTGACCCTCAACAATTTCTTAGGCCTCTATGCCATATGTGCTGCCACATCCACCATTTGCTTAGTGCTGGCATTGCTGACAAAATTGCACAACCACCATCATCATCATAATCAAGAAGCAGCAGCAAGTCAGCTAGAAAGGAGAGATGAGGATAGTGTTTTGAAAAGGGCATTTAGATTGAGTACAGAACTATATAATGGAAACCTCAAAACTCTAGATAGATCTGCAACTACACAAGGGGTGCGCCTTAGGAATAATTCACCAAAGTGGGGGAGTGTAAGAACTTCTGACAATGTAACAAATCCACAACGCTCCCAATCAGCTGTAATAAGAATGCTATAA 2754 0.3816 MNSHNPTYITDTNILLLLPIIITLILFTSLSEIQAAKTPQNASVGVVIDVNSDTGKQQRRAMEIAAQTFNNHLKTHNIVLSFLDSGSNPLQAASAAEELITKKKVEVIIGMETWQEAALVADLGAKAQVPVISFSSPPIVPPLMQTRWPFLIQMAENHTAHMNCIADIIHSYNWQKVVAIYEDDSYSSYSGILSLLSESLNKVDSEIEYQLVLPPFTSLTDPKGVVLDELLKLLQLKSRVFIVLQASLPMVTHLFREAKKIGLMGKDSAWIINEGITSTFDSYNTTALSSMEGTLGIKTYYSTSSSAFTQFQENFQGETSKPGLYALRAYDSITIIAKALENMNANSSNSRVFMEKMLSSNFDGLSGRISFRESHLSYTPIMRVINVVNKRYTELDFWTPELKFSRSLKILEDIKKRGDLGTRNITGTVVWPGGLNSLVHIPMGWKLPTDTNPLKVAVPVNPLFENFVKEVSQNQYQGFCIDLFYSTREILSDNYGGLLPYEFHAFNESYDSLFQNLINESYDAIVGDVTILANRSKYVSFTQPYTESGLSLILPVESEGQAWLFLKPFSWQMWVATCSILVYTMFVVWFLEHRLNPEFGGPLKTQISTTLWFAFSSLYFAHKEKINSNSARVVVGVWLFLVFVLTSSYTASLSSMLTVTKLKSGRDIDWLRQNNLPVGCDNVSTFVKDYMINVYKLHPEKIIGVNDENDIVEKFKTKQIVALFLESPYEKVFLNKYCNQYSSTTAAYRFGGMGFVFQKGSPMAKDFSEAILTLAEDGTLKKLEDEWLTPSNECSNTSSPETESLTLNNFLGLYAICAATSTICLVLALLTKLHNHHHHHNQEAAASQLERRDEDSVLKRAFRLSTELYNGNLKTLDRSATTQGVRLRNNSPKWGSVRTSDNVTNPQRSQSAVIRML 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211679g00004 917 FunFam Glutamate receptor 562 692 - -
Stsc211679g00004 917 Gene3D - 731 796 - -
Stsc211679g00004 917 Pfam Receptor family ligand binding region 59 386 IPR001828 -
Stsc211679g00004 917 SUPERFAMILY Periplasmic binding protein-like II 439 789 - -
Stsc211679g00004 917 SUPERFAMILY Periplasmic binding protein-like I 40 399 IPR028082 -
Stsc211679g00004 917 MobiDBLite consensus disorder prediction 880 917 - -
Stsc211679g00004 917 Pfam Ligand-gated ion channel 790 819 IPR001320 GO:0015276|GO:0016020
Stsc211679g00004 917 PIRSF IGluLR_plant 11 915 IPR017103 -
Stsc211679g00004 917 Gene3D - 562 696 - -
Stsc211679g00004 917 CDD PBP1_GABAb_receptor_plant 43 408 IPR044440 -
Stsc211679g00004 917 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 842 IPR015683 -
Stsc211679g00004 917 SMART GluR_14 455 790 IPR001320 GO:0015276|GO:0016020
Stsc211679g00004 917 Pfam Bacterial extracellular solute-binding proteins, family 3 467 789 IPR001638 -
Stsc211679g00004 917 Gene3D - 161 322 - -
Stsc211679g00004 917 Gene3D - 449 561 - -
Stsc211679g00004 917 Gene3D - 40 160 - -
Stsc211679g00004 917 FunFam Glutamate receptor 161 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211679g00004 Stsc-Chr211679 11998 15240 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211679g00004 44 838 Ion Channels AT2G29120 32.300 1.47e-123 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211679g00004 - - gmx:100818078 1201.42