Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211679g00003 ATGATTTGGCTCTTCTTTTTTCTTGTTTTCACCAATGCAAACTCACATGAGGCCAAGAATGAAAGCAGAAAAGTTATATCAGTTGGGGCAATCATTGATGCTGATTCTCGTGTAGGGAAAGAGCAGAAAGTAGCCATGGAAATTGCAGCACAAAGGTACAATAGCACTTCAAAGACCTACAAGTTGTCTCTCCATTTTCAAAACTCCACCATGGACCCCATAAGTGGCACCATTGTTGCTGAAGAAATGATAAGAATGCAGAAAGTGCAAGTAATTTTAGGATTGTACACATGGCCAGAAGCAGCTCTTGTAGCTGAAATAGGATCAGGATTTCAAGTTCCTGCTATATCCTATGCAGAACCTTCCATTACTCCACCATTGATGTCAATTCGGTGGCCTTTTTCGGTAAGAATGGCTAATGGTGGCAGAGCATATGTAAAATGCATTGCAGATATAGTTAAAGCTTATGGCTGGCAAAGAGTAATAGCCATCTATGAAGATGATGCCTATGGTGGAGAACAAGGGATGCTAGCCCTGTTATCTGAGACCCTCCAAGATGCAAATTCAATGATTGAGTACAATTTTGTTCTTCCACCAATTTCTTCTCTGAATGATCCTAGAGGAGTAGTGCAAGACGAGCTGCTTAAGTTAATGAATACACAACAATCACGAGTGTTTATCGTGCTGCAATCATCGCTAGAGATGGCGATTCACTTGTTCAGAGAAGCTTCAAATATAGGACTTGTGGATAGAGATTCAGTTTGGATAATCCCAGAGAGCATAACCAATCTAATTGACTCCATCAACAGGTCTTCCATTTCATACATGGAAGGAGCTATAGGAATCAAGAACTACTACTCTGAAGGAAGCAACAAGTACCAAGATTTTGAGGCTCAGTTTCAGAGAACTTTCTGGACAAGAAACCCCGAAGAAGATAACCGAAAGCCTGGATTTTTTGCTTTGCAAGCATATGATAGCATTAACATTGTGACTCAAGCACTAGAAAGAATGACCAATGGCAATAGCAGCACAAAGACCTTACTAAAAGAAATACAATCAAGCAATTTTTCTGGTTTAAGTGGTCATATTGAATTTGAAGATGGAAAACTGCTGCAGAATCCTATCTTGAGGGTAGTAAATGTGGTTGGGAAGAGTTACAAGGAATTGTGCTTTTGGACTCAGCAACATGGATTCTCCACAAGCTTCCATGCAGGAAAAGATGGTGGAAATTATAACCATGTTTCAGAATGCTTCAGTGGTGTACTTTGGCCTGGGAATTTGCATAGGACACCAAAGGGATGGAAAATGCCTACAAAACAAAAACCTATGCAAATCGCGGTCCCAGGGAGAACTACATTTTCCAGGTTTGTCAAGGTTGGTTATGGAAAGAATCGGAATCTCGATAAGTATGATGGATTCTGCATCAAGATTTTTGAGCAGGTGCACAAACATTTGGGGTATGATCTACCCTTTCAGTACCATGCTATCAATTGCACCTATCCTGATTTGGTTCAATTAGTCTATAACAAGACTTATGATGCTGTTGTTGGGGATATAACCATACTAGAGGAAAGATTGCCATACGTGGACTTCACTGTGCCATATGCAGAATCAGGATTGTCAATGTTAGTTCCAGCAAAGTCTGAAGAATCAGCATGGATGTTCACCAAGCCATTTACCTGGCAACTTTGGACAGTTACAGGGGCCATCCTGATCTACACAATGGTAGTGGTTTGGCTACTTGAGAAAGAACCTAATCCAGAGTTTCATGGCAATTGGAAGAGCCAGATCAGCACTGCTCTTTGGTTTACCTTCTCCTCTTTGTTCTTTGCTCACAGGGAGAAAATGTATAGAAAGTTAACTCGGGTGGTGATGGTGTCATGGCTCTTCCTAGTTCTGATTCTTAATTCAAGCTACACTGCAAGTCTTTCTTCAATGCTCACTGTGAAACAGCTGCAGACAAATGTCACAAACATTGAGTGGCTGAAGAAGAACAACATGAAGATTGGTTGTGATGGTGACTCATTTGTAAGAAATTACCTGGAGGATGTAGAGAAGTTCAAGCCAGAGAACATTATCAACATAACCAGTGAAGACAAATACATTGATGCATTTGCAAATGGTAGCATAGTAGCTGCATTTCTTGAATTGCCCTATGAAAAAGTCTTCATTAGTGAATACTGTGATGGATACACTGCCTCCACTCCCAGAACTAGATTTGGAGGATTAGGATTTGTAAATGTTCCAGAAAGGCTCACCAGTGACAAGAGATGTTTCCAGAGCTATCTTACATCTGTCAGAAAACGGAGAGCTGAAGAAGCTGGAAGAGGAATGGTTGTTGAGTGCATCAGAGAAATGCTCCAACAACATGACCTCCAACGGCATGGAAAGCTTGAGTCTGAGAAGCTTGTGGATTCTATTCGTCATCTCCGGTGTCACTTCTACTATTTGTCTGCTACTATCAGCAATCCAATGCCCGTATTGAATGTTATTCCACGTGTAACGGTGGCAGTAACAGCAGCGGCGGCGCCAGTAGTAGGAGTGGTGCTATCTGCGCGTTCACGCACAAGAGGAAGAAAGCCACTCACGCCAATTGGAAGAGGCGGAGCCGCACGCCGCATAAGTTCCAAGCCGCTCACACTCACAGTCACAGCAATGCGAGCCGTCGTTCAGCGAGTCGCCTCCGCATCCGTCGAGGTTGAAGGCCGCATCGTCTCCGAGATCGGCCCTGGACTCCTCGTCCTTGTCGGAATCCACGAATCCGATTCCGAAGCCGACGCCGATTACATATGCAGGAAGGTCTTGAATATGAGGTTGTTCCCAAATGAAAATACAGGAAAAGCATGGGACCATAGCGTGATGCAGAAAAATTATCAAGTTCTTTTAGTGAGCCAGTTTACCTTGTATGGATTCCTCAAGGGTAACAAGCCAGATTTTCATGTTGCTATGCCTCCACAGAAAGCAAAGCCCTTCTATGCTTCTTTAGTTGACAAGTTCAGGAATGCCTATAACTCAGATGCTATCAGGGATGGTGTGTTTGGAGCGATGATGAAGGTATGTAACATCACCCTGACTCTTGTGTGA 3084 0.4283 MIWLFFFLVFTNANSHEAKNESRKVISVGAIIDADSRVGKEQKVAMEIAAQRYNSTSKTYKLSLHFQNSTMDPISGTIVAEEMIRMQKVQVILGLYTWPEAALVAEIGSGFQVPAISYAEPSITPPLMSIRWPFSVRMANGGRAYVKCIADIVKAYGWQRVIAIYEDDAYGGEQGMLALLSETLQDANSMIEYNFVLPPISSLNDPRGVVQDELLKLMNTQQSRVFIVLQSSLEMAIHLFREASNIGLVDRDSVWIIPESITNLIDSINRSSISYMEGAIGIKNYYSEGSNKYQDFEAQFQRTFWTRNPEEDNRKPGFFALQAYDSINIVTQALERMTNGNSSTKTLLKEIQSSNFSGLSGHIEFEDGKLLQNPILRVVNVVGKSYKELCFWTQQHGFSTSFHAGKDGGNYNHVSECFSGVLWPGNLHRTPKGWKMPTKQKPMQIAVPGRTTFSRFVKVGYGKNRNLDKYDGFCIKIFEQVHKHLGYDLPFQYHAINCTYPDLVQLVYNKTYDAVVGDITILEERLPYVDFTVPYAESGLSMLVPAKSEESAWMFTKPFTWQLWTVTGAILIYTMVVVWLLEKEPNPEFHGNWKSQISTALWFTFSSLFFAHREKMYRKLTRVVMVSWLFLVLILNSSYTASLSSMLTVKQLQTNVTNIEWLKKNNMKIGCDGDSFVRNYLEDVEKFKPENIINITSEDKYIDAFANGSIVAAFLELPYEKVFISEYCDGYTASTPRTRFGGLGFVNVPERLTSDKRCFQSYLTSVRKRRAEEAGRGMVVECIREMLQQHDLQRHGKLESEKLVDSIRHLRCHFYYLSATISNPMPVLNVIPRVTVAVTAAAAPVVGVVLSARSRTRGRKPLTPIGRGGAARRISSKPLTLTVTAMRAVVQRVASASVEVEGRIVSEIGPGLLVLVGIHESDSEADADYICRKVLNMRLFPNENTGKAWDHSVMQKNYQVLLVSQFTLYGFLKGNKPDFHVAMPPQKAKPFYASLVDKFRNAYNSDAIRDGVFGAMMKVCNITLTLV 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211679g00003 1027 Pfam Ligand-gated ion channel 561 674 IPR001320 GO:0015276|GO:0016020
Stsc211679g00003 1027 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 27 746 IPR015683 -
Stsc211679g00003 1027 SUPERFAMILY DTD-like 885 1019 IPR023509 -
Stsc211679g00003 1027 SUPERFAMILY Periplasmic binding protein-like I 23 434 IPR028082 -
Stsc211679g00003 1027 Gene3D - 886 1023 IPR023509 -
Stsc211679g00003 1027 CDD PBP1_GABAb_receptor_plant 27 402 IPR044440 -
Stsc211679g00003 1027 Gene3D - 452 551 - -
Stsc211679g00003 1027 FunFam Glutamate receptor 552 682 - -
Stsc211679g00003 1027 Gene3D - 144 315 - -
Stsc211679g00003 1027 Gene3D - 20 140 - -
Stsc211679g00003 1027 Pfam D-Tyr-tRNA(Tyr) deacylase 887 1019 IPR003732 GO:0002161|GO:0005737|GO:0051499
Stsc211679g00003 1027 SUPERFAMILY Periplasmic binding protein-like II 419 745 - -
Stsc211679g00003 1027 SMART GluR_14 444 754 IPR001320 GO:0015276|GO:0016020
Stsc211679g00003 1027 Pfam Bacterial extracellular solute-binding proteins, family 3 468 721 IPR001638 -
Stsc211679g00003 1027 FunFam Glutamate receptor 438 552 - -
Stsc211679g00003 1027 Gene3D - 322 446 - -
Stsc211679g00003 1027 Pfam Receptor family ligand binding region 43 381 IPR001828 -
Stsc211679g00003 1027 NCBIfam D-aminoacyl-tRNA deacylase 886 1020 IPR003732 GO:0002161|GO:0005737|GO:0051499
Stsc211679g00003 1027 Gene3D - 552 686 - -
Stsc211679g00003 1027 FunFam Glutamate receptor 145 314 - -
Stsc211679g00003 1027 FunFam D-aminoacyl-tRNA deacylase 886 1023 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211679g00003 Stsc-Chr211679 4708 10808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211679g00003 26 755 Ion Channels AT2G29120 33.640 1.11e-127 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211679g00003 - - aip:107623836 1376.3