Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211678g00007 ATGCAATTCTCTGAGAAAATGCAACCCCAGAAGATGGGGTTTCGCGAGTACATCGAAGCATTGGAGGACGAGAGAAGAAAAATCCAAGTCTTTCACAGAGAGCTTCCTCTGTCCTTAGAACTTGTCGCGCAAGCAATTGAAGCGTGTAGGCAGCAGTTATCTGGAACAACGACAGAGTACAATTTGAATGGCCAATCGGAGTGTTCGGAGCAGACATCACCGGAAGATCCTGTTTTTGAGGAGTTCATTCCAATCAAGAAAAGGGCTTCACCTGATTGTGATGAAGATGATGAAGAATGTTATGATGATGGTGATGCAGAGCGACATTCTCATAGAAACAAGATTCAAAAGGAGGATAGCACCAACAAGAACAGCAACAACAATAATAATAATAACAGCAGCAGCAGCACTGATAAGAAGAAATCTGACTGGCTCAGATCTGTTCAGTTGTGGAATCCTAATCCCCAACCACCTAAGGAGGATGTGCCTAGAAAAGCATCTGTTGTGGAAGTGAAGAGAAGCATTGGTGGTGCTTTTCAGCCATTCCACAGAGAGGAGAACACTGTTGGAAAGGCTAATGCATGGTCATCGTCATCATTGCCAACTGCCAAGACTCCTTCTTCTCCGCCGGTGCCGGCAACAAGTTCCACAGGACCTGACTCAACCGGAGGCAGTGCTGGAAGCGGCGGCAAAAGGGAGGAGAAAGGACAGGGTCCGAGGAAGCAGCGCCGGTGCTGGTCTCAGGAGCTACACAAACGGTTCCTTCATGCCCTTCAGCAGCTTGGAGGTGCAGATTCTGCAACCCCAAAGCAGATCAGGGAGCTAATGAAGGTTGATGGCCTCACAAATGATGAAGTCAAAAGTCACTTGCAGAAATTTCGTCTCCACACAAGAAGGCCAACCAGTATGATTCCAAACAATGCAAATTCCCAAACTGCTCCCTTGTTCCTTGTTGGCAACATTTTTGTCCAACCACCAGAATATGCTGCTGCTGCTGTAGCTGCCTCAACAGTTTCATCAGGGGATTTAACCACGGTTACAACTGCAACACATAATGCTATTTATGCACCTGTGGCTACACATCCTCCTACTACTACTGTTCCCCAAAAACAAACTCATCCTTCAATGAAGAACTCACCAAAATGCAACAACTTGGAAGATGTTTCAGATCATTCACATTCAGAAGAAAAGGCTAATCACAGTGAAGGAAATTCTCCTGCCTCATCATCATCCACACATACCACCACAACTTCCCGTGGCAGTTGA 1266 0.4629 MQFSEKMQPQKMGFREYIEALEDERRKIQVFHRELPLSLELVAQAIEACRQQLSGTTTEYNLNGQSECSEQTSPEDPVFEEFIPIKKRASPDCDEDDEECYDDGDAERHSHRNKIQKEDSTNKNSNNNNNNNSSSSTDKKKSDWLRSVQLWNPNPQPPKEDVPRKASVVEVKRSIGGAFQPFHREENTVGKANAWSSSSLPTAKTPSSPPVPATSSTGPDSTGGSAGSGGKREEKGQGPRKQRRCWSQELHKRFLHALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRPTSMIPNNANSQTAPLFLVGNIFVQPPEYAAAAVAASTVSSGDLTTVTTATHNAIYAPVATHPPTTTVPQKQTHPSMKNSPKCNNLEDVSDHSHSEEKANHSEGNSPASSSSTHTTTTSRGS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211678g00007 421 Pfam Myb-like DNA-binding domain 243 292 IPR001005 -
Stsc211678g00007 421 MobiDBLite consensus disorder prediction 357 421 - -
Stsc211678g00007 421 Gene3D - 240 298 - -
Stsc211678g00007 421 MobiDBLite consensus disorder prediction 401 421 - -
Stsc211678g00007 421 MobiDBLite consensus disorder prediction 88 167 - -
Stsc211678g00007 421 MobiDBLite consensus disorder prediction 104 119 - -
Stsc211678g00007 421 MobiDBLite consensus disorder prediction 384 400 - -
Stsc211678g00007 421 MobiDBLite consensus disorder prediction 120 138 - -
Stsc211678g00007 421 FunFam Myb family transcription factor 240 298 - -
Stsc211678g00007 421 MobiDBLite consensus disorder prediction 193 224 - -
Stsc211678g00007 421 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 379 IPR044787 GO:0003700|GO:0006355
Stsc211678g00007 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 238 298 IPR017930 -
Stsc211678g00007 421 MobiDBLite consensus disorder prediction 193 245 - -
Stsc211678g00007 421 NCBIfam myb-like DNA-binding domain, SHAQKYF class 241 296 IPR006447 GO:0003677
Stsc211678g00007 421 SUPERFAMILY Homeodomain-like 239 299 IPR009057 -
Stsc211678g00007 421 MobiDBLite consensus disorder prediction 362 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211678g00007 Stsc-Chr211678 56487 59175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211678g00007 1 360 G2-like Transcription Factor Family AT1G68670 46.277 1.35e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc211678g00007 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211678g00007 - - adu:107491291 641.343