LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc211677g00003	ATGGCGGCGGCAACAGCCGAAAACGTATCGAAGGAAACGGTGCAGCGCTACGAAGAAGACGCAAGCGACGATAAGACCTTCGAGGAGCTCGGTGTGGACGCTCGTCTCGTTCGTGCCTTGCTCAAGAAAGGAATAGACAAGCCCACTCCAATTCAGACCGTCGCTATTCCTCTCATTCTGGAAGGTAAGGATGTGGTTGCTCGTGCAAAGACAGGGTCTGGGAAGACGTTTGCTTACCTTCTCCCAATGCTACAGAAACTGTTTGCCAATGTTGATAGGAAGAAGCAGGCACCCAGTGCTTTTGTTCTTGTACCGACTCGCGAGCTTTGTCAACAGGTCTACACAGAGGTTGTGTCACTCGTTGAGTTATGCAGAGTTCAATTGAAAGTCGCGCAATTGAACAGCAATATGCATGCTACTGACCTGCGTGCAGCTCTGACTGGACCCCCTGATATTTTGATCTCCACACCTGCTTGCCTAGCGAAGTGCTTGTCTGAAGGGGTACTTCAACCAGCTTCCATTAATGCTACACTCGAAACACTAATTCTTGATGAGGCAGATCTTTTGTTATCGTATGGATATGAAAATGATATAAAATCTTTTACACCTCATGTACCCAGAAGTTGCCAGTGTCTTCTTATGTCAGCAACATCAAGTGCTGATGTTGACAAACTAAAGAAGTTGATTCTACACAACCCATTTATTTTGACTTTGCCTGAAGTGGGGAATAATAAGGATGACATCATCCCAAAAAATGTTCAGCAATTCTGGATCTTGTGCCCTGCCAATGATAAGTTGCTCTACACCCTTGCTGTTTTGAAGTTGGAGTTAGTGCAAAAGAAAGTTCTGATATTCACCAATGACATAGACATGAGTTTCAGATTGAAATTGTTCCTAGAAAAGTTTGGGATAAAATCGGCTGTTTTAAATGCTGAGTTGCCACAGAATTCTCGACTCCATATTCTTGAGGAGTTCAATGCGGGTCTGTTTGATTATCTAATTGCAACTGATCTCAGTCAGTCAAAGGAGAAGGATGAAGCACCTAAAGTAAACAACGGATCACGAAAGTCCAGAAAACATAAACTTAAACTAGATTCTGAATTTGGAGTAGTAAGGGGAATTGACTTCAAAAATGTATTCACGGTTATAAACTTTGATATGCCTCGAAGTGTTGCAGGATATGTACATCGAATTGGACGTACGGGAAGAGCATATAGTTCTGGTGCTTCTATTTCTCTGGTTTCAACTGATGAGATGGAAACATTAGAAGAAATAAAATCTTTTGTTGGTGATGATGAAAACAAGGGCTCAAACACAATTGTGGAGTTTCCTTTCCTCACCAAGAATGCAGTTGAATCTTTGCGGTATAGGGCTGAGGACATTGGGAAGAGCATAACTAAAATTGCTGTCCGAGAATCACGTGCCCAGGATTTGAGGAATGAAATTCTAAACTCTGAAAAGTTGAAGGCCCACTTCGAAAGTAATCCAAGAGACTTAGATCTGTTGAAACATGATAAAGTTTTAAGCAAGAATGCGCCTCCTTCACACCTGCGCGATGTGCCTAATTACCTATTAGACAAGACCACCCAGGAGGCAAGGAAAATGGTCAAGCTTGCAAGTGATGCAATGGGAAATAATAAACGTTGCAAGGGATTCAAGAAAAAACCAAAAAAAGGGGGAGACCCTCTGAAGGCGATCTCTGCTGCGGTGTCAAAACGACCGCACAAAGGTGGAAGCCACAACAATGGCGGTAGTAGACATAGGCACAAAAAGACTGACTGA	1782	0.4299	MAAATAENVSKETVQRYEEDASDDKTFEELGVDARLVRALLKKGIDKPTPIQTVAIPLILEGKDVVARAKTGSGKTFAYLLPMLQKLFANVDRKKQAPSAFVLVPTRELCQQVYTEVVSLVELCRVQLKVAQLNSNMHATDLRAALTGPPDILISTPACLAKCLSEGVLQPASINATLETLILDEADLLLSYGYENDIKSFTPHVPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNNKDDIIPKNVQQFWILCPANDKLLYTLAVLKLELVQKKVLIFTNDIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDEAPKVNNGSRKSRKHKLKLDSEFGVVRGIDFKNVFTVINFDMPRSVAGYVHRIGRTGRAYSSGASISLVSTDEMETLEEIKSFVGDDENKGSNTIVEFPFLTKNAVESLRYRAEDIGKSITKIAVRESRAQDLRNEILNSEKLKAHFESNPRDLDLLKHDKVLSKNAPPSHLRDVPNYLLDKTTQEARKMVKLASDAMGNNKRCKGFKKKPKKGGDPLKAISAAVSKRPHKGGSHNNGGSRHRHKKTD	593

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc211677g00003	593	Coils	Coil	475	495	-	-
	Stsc211677g00003	593	SMART	ultradead3	44	256	IPR014001	-
	Stsc211677g00003	593	MobiDBLite	consensus disorder prediction	1	20	-	-
	Stsc211677g00003	593	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	24	237	IPR027417	-
	Stsc211677g00003	593	Gene3D	-	242	443	IPR027417	-
	Stsc211677g00003	593	SMART	helicmild6	293	405	IPR001650	-
	Stsc211677g00003	593	CDD	SF2_C_DEAD	253	414	-	-
	Stsc211677g00003	593	MobiDBLite	consensus disorder prediction	541	593	-	-
	Stsc211677g00003	593	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	269	451	IPR001650	-
	Stsc211677g00003	593	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	56	236	IPR014001	-
	Stsc211677g00003	593	MobiDBLite	consensus disorder prediction	579	593	-	-
	Stsc211677g00003	593	PANTHER	RNA HELICASE	18	475	-	-
	Stsc211677g00003	593	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	25	53	IPR014014	GO:0003724
	Stsc211677g00003	593	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	248	430	IPR027417	-
	Stsc211677g00003	593	CDD	DEADc_DDX56	32	238	-	-
	Stsc211677g00003	593	Gene3D	-	2	238	IPR027417	-
	Stsc211677g00003	593	Pfam	Helicase conserved C-terminal domain	264	405	IPR001650	-
	Stsc211677g00003	593	Pfam	DEAD/DEAH box helicase	49	225	IPR011545	GO:0003676\|GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc211677g00003	Stsc-Chr211677	4967	11878	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc211677g00003	26	428	Eukaryotic Initiation Factors Gene Family	AT3G19760	26.055	6.04e-37	140

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc211677g00003	K14810		-	gmx:100800749	921.383