Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211673g00017 ATGATGCAGATTGATGAAATCAAGAAAGAGCAACAAGTAGAAGAGGACGACGAAGGCCCGCCACCAGGTTGGAAGCCCATCCATACGCCACCGCCGCAACTGCCTCCACAGTCACAGTCACCACCTCGACGTCCATCCAATTTGGGTCAAATAGTTTGTGGGTCTTGCCATCGCCTCCTTGCATATCAGCGAGGTGCCAAACATGTCCAATGTGTGAGCTGTCAGACAGTCAACATTGTATTAGAGGCTGATCAGGTTGGACAAGTTAAGTGTGGGGGCTGTGCAGTATTGCTAATGTACCCATATGGTGCTCCACAAGTTAGGTGTTCATCATGTCGATTTGTGACAGAAATTGGGGCACACAACAAACGGCCTCCATGGTCTGAACAACAAAGGAAACCAAACCTACCTAAAACTGCTAGTTAG 426 0.4859 MMQIDEIKKEQQVEEDDEGPPPGWKPIHTPPPQLPPQSQSPPRRPSNLGQIVCGSCHRLLAYQRGAKHVQCVSCQTVNIVLEADQVGQVKCGGCAVLLMYPYGAPQVRCSSCRFVTEIGAHNKRPPWSEQQRKPNLPKTAS 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211673g00017 141 NCBIfam zinc finger domain, LSD1 subclass 88 116 IPR005735 -
Stsc211673g00017 141 NCBIfam zinc finger domain, LSD1 subclass 50 80 IPR005735 -
Stsc211673g00017 141 Pfam LSD1 zinc finger 53 77 IPR005735 -
Stsc211673g00017 141 Pfam LSD1 zinc finger 91 115 IPR005735 -
Stsc211673g00017 141 MobiDBLite consensus disorder prediction 23 42 - -
Stsc211673g00017 141 MobiDBLite consensus disorder prediction 1 22 - -
Stsc211673g00017 141 MobiDBLite consensus disorder prediction 1 46 - -
Stsc211673g00017 141 PANTHER PROTEIN LSD1 14 134 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211673g00017 Stsc-Chr211673 53025 54841 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Stsc211673g00017 zf-LSD1 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211673g00017 - - gmx:100780865 202.216