Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211673g00015 ATGGCCTTTGATCATAATTACTATTCCCATGGATTTAAAACTCTCCCAAATTCCCTCAGAGACACAGAAAATTATAACAATTCCAATGGTTGTTTAGATTGCAACATATGCTTAGACTTAGCAAACGAGCCAGTTGTCACACTCTGTGGCCATCTCTACTGCTGGCCCTGCATCTACAAATGGCTCCATGTCCAGAGCGCTTCCCTTGCCTACAACCAGCAGCCGCTATGCCCTGTCTGCAAAGCTGAAATATCCCACACTGCAATGGTTCCCCTCTACGGCCGTGGACACAGCAACAGCAACCGCGAAGAGAAGGCAGCCTCCTCCTGCAGGGACATTTGTGTTCCGCCGAGGCCACCTGCTTCCGGTCCCCTGTCTTTGCTGGCCATGTCTCAAAATGCCCAGCAGCGGCTTCCTTATCGGAATCCTTACCGAGGTCAACACTTTAGCCTTGCTCAAGAGGACGACAACGCTTCACAAATGCTGAATCTTGGTACTTCCGTATCGCCAGCATTCTTCCCCGACCATATGGTTGGAATGTTTGGGGAGATGTTCTACACCAGAGTGTTTGGCAACTCGGAAAGTTTGTATGGATACCCAAATTCTTATTACACAGTGGGGAGTATTAGCCCTAGGTTGAGAAGGCAAGAGATGCAGGCAGATAAATCATTGAACAGAATCTCCATTTTTCTGCTTTGTTGCTTTATTCTGTGTCTTATTGTCTTTTGA 729 0.4746 MAFDHNYYSHGFKTLPNSLRDTENYNNSNGCLDCNICLDLANEPVVTLCGHLYCWPCIYKWLHVQSASLAYNQQPLCPVCKAEISHTAMVPLYGRGHSNSNREEKAASSCRDICVPPRPPASGPLSLLAMSQNAQQRLPYRNPYRGQHFSLAQEDDNASQMLNLGTSVSPAFFPDHMVGMFGEMFYTRVFGNSESLYGYPNSYYTVGSISPRLRRQEMQADKSLNRISIFLLCCFILCLIVF 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211673g00015 242 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Stsc211673g00015 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 22 239 IPR045103 GO:0005783|GO:0006511|GO:0061630
Stsc211673g00015 242 SMART ring_2 34 80 IPR001841 -
Stsc211673g00015 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 94 IPR013083 -
Stsc211673g00015 242 Pfam Zinc finger, C3HC4 type (RING finger) 34 80 IPR018957 GO:0046872
Stsc211673g00015 242 SUPERFAMILY RING/U-box 31 93 - -
Stsc211673g00015 242 ProSiteProfiles Zinc finger RING-type profile. 34 81 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211673g00015 Stsc-Chr211673 48450 50206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211673g00015 8 228 C3H Transcription Factor Family AT4G27470 40.000 1.32e-41 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211673g00015 K10666 - gmx:100816864 283.493