Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211673g00014 ATGGCGTCTTTCTTCGGTTCGTCGTCGGCTTCCACATCCATGGTGGTCACCAACACGCCGTCGCAGGACCTTGCCCTTACCAATCTCGCCTTCTGTTCCTCCTCCGATCTCCGCAACTACGCCGTCCCCAATCACCCCAACCTCTTCCTCGCCTTCGTCGGCGACTCCTTCGTCTTCGCTCTCTCAGCTCATGAGAACATTCGCAGCGGCCAGATTGCTCTCAATTCCATTCAACGTCGATGTGTTAAAGTCTCCGCTGCTGAATCCATTCCTGTCACCAGATTTGTTCCACCTGAAAACTTCGAGTTGGCATTGTTAACCCTTGACCTGGAATTCATTAAAAAAGGGGCAAAGAGTGAACAGATTGATGCTCAACAACTGTCTAAGCAACTTCGGAAGAGGTTTGCAAACCAGGTTATGACAGTAGGGCAGAAAGTGTTATTTGAGTATCATGGAAATAATTATAGCTTCACAGTTACTCAAGCTGCTGTTGAGGGTCAAGAAAAGACTAATGCTCCTGAAAGAGGGATGATCTCAGATGACACATATGTTGTTTTTGAAACAGCACGTGATAGTGGAATCAAGATTGTCAATCAGCGGGAGGCTGCCACTAGCAACATTTTTAAGCAGAAAGAGTTTAATCTTCAGTCTCTGGGTATTGGAGGCCTGAGTGCAGAGTTTGCAGATATATTTCGAAGAGCCTTTGCCTCCCGTGTTTTCCCTCCCCACGTGACATCCAAATTAGGGATCAAGCATGTGAAGGGCATGCTGCTTTATGGCCCCCCTGGAACTGGAAAGACACTTATGGCACGACAAATTGGCAAGATTCTGAATGGGAAGGAACCAAAGATTGTCAATGGCCCTGAAGTTTTGAGCAAATTTGTTGGTGAAACTGAAAAGAATGTGAGAGACCTTTTTGCTGATGCTGAACAAGAGCAGAGGAGCCGAGGGGATGAAAGTGATTTGCATGTAATTATCTTTGATGAAATTGATGCTATTTGTAAGTCAAGAGGTTCAACTCGTGATGGTACTGGAGTTCATGATAGCATTGTGAACCAGCTTCTTACTAAGATAGATGGTGTGGAGTCGCTAAATAATGTTTTGCTTATTGGAATGACCAACAGAAAGGACATGCTTGATGAGGCTCTCTTAAGACCAGGGAGGTTGGAAGTCCAGGTTGAGATAAGCCTTCCTGATGAAAATGGTCGATTGCAAATTCTTCAAATTCATACTAACAAGATGAAAGAGAATTCTTTTCTTGCTCCTGATGTGAATCTTCAAGAGCTTGCTGCTAGAACAAAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTCAAAAGTGCTGTTTCATATGCTTTAAATCGACAACTGAGTCTAGAGGATCTCACGAAGCAAGTTGAGGAAGAGAATATTAAGGTTACAATGGATGACTTTTTGAATGCACTCCATGAAGTTACTCCTGCATTTGGGGCTTCCACTGATGATCTTGAAAGATGCAGACTCCATGGCATGGTGGACTGTGGTGACCGACATAAGCACATTTATCAAAGAGCAATGCTACTTGTGGAGCAAGTAAAAGTTAGCCGAGGAAGCCCACTTGTTACTTGTCTTCTGGAAGGTTCCAGTGGCAGTGGTAAGACGGCACTTGCAGCTACTGTTGGTATTGACAGTGATTTCCCATATGTCAAGATTGTTTCAGCTGAAACAATGATTGGTCTACATGAGAGCACGAAATGTGCACAGATTATCAAGGTTTTTGAGGATGCATACAAGTCACCGTTGAGTGTTATTGTCCTTGATGACATTGAGAGGTTATTGGAGTATGTGGCCATTGGTCCCCGTTTTTCAAACTTGATTTCTCAGACACTGTTAGTCCTACTCAAACGGCTTCCTCCAAAGGGTAAAAAACTCATGGTTATTGGTACAACAAGTGAATTGAGTTTCTTGGACTCGATTGGATTTTGTGATGCTTTCTCCGTCACTTACCATGTTCCTGCCTTGAATACAAATGATGCTAAGAAGGTCCTAGAACAGTTGAATGTTTTTGCTCATGAAGATATTGATGCTGCTGCAGAGGCATTGAATGATATGCCTATTAGGAAGCTGTACATGTTGATTGAGATGGCAGCACAAGGGGCTCAAGGTGGATCAGCAGAAGCTGTCTATTCTGGCAAAGAGAAGATCAGTATCTCTCATTTCTACGATTGCCTTCAGGATGTTGTCAGAATATAG 2232 0.4364 MASFFGSSSASTSMVVTNTPSQDLALTNLAFCSSSDLRNYAVPNHPNLFLAFVGDSFVFALSAHENIRSGQIALNSIQRRCVKVSAAESIPVTRFVPPENFELALLTLDLEFIKKGAKSEQIDAQQLSKQLRKRFANQVMTVGQKVLFEYHGNNYSFTVTQAAVEGQEKTNAPERGMISDDTYVVFETARDSGIKIVNQREAATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQEQRSRGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLEDLTKQVEEENIKVTMDDFLNALHEVTPAFGASTDDLERCRLHGMVDCGDRHKHIYQRAMLLVEQVKVSRGSPLVTCLLEGSSGSGKTALAATVGIDSDFPYVKIVSAETMIGLHESTKCAQIIKVFEDAYKSPLSVIVLDDIERLLEYVAIGPRFSNLISQTLLVLLKRLPPKGKKLMVIGTTSELSFLDSIGFCDAFSVTYHVPALNTNDAKKVLEQLNVFAHEDIDAAAEALNDMPIRKLYMLIEMAAQGAQGGSAEAVYSGKEKISISHFYDCLQDVVRI 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211673g00014 743 Pfam ATPase family associated with various cellular activities (AAA) 256 396 IPR003959 GO:0005524|GO:0016887
Stsc211673g00014 743 Pfam ATPase family associated with various cellular activities (AAA) 537 650 IPR003959 GO:0005524|GO:0016887
Stsc211673g00014 743 Pfam Cell division protein 48 (CDC48), domain 2 121 166 IPR004201 -
Stsc211673g00014 743 ProSitePatterns AAA-protein family signature. 367 385 IPR003960 GO:0005524|GO:0016887
Stsc211673g00014 743 SMART AAA_5 532 670 IPR003593 GO:0016887
Stsc211673g00014 743 SMART AAA_5 252 399 IPR003593 GO:0016887
Stsc211673g00014 743 FunFam Vesicular-fusion ATPase SEC18 208 398 - -
Stsc211673g00014 743 FunFam vesicle-fusing ATPase isoform X1 494 665 - -
Stsc211673g00014 743 Gene3D - 494 665 IPR027417 -
Stsc211673g00014 743 SUPERFAMILY ADC-like 10 95 IPR009010 -
Stsc211673g00014 743 Gene3D - 99 196 - -
Stsc211673g00014 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 712 IPR027417 -
Stsc211673g00014 743 FunFam Vesicle-fusing ATPase protein 11 95 - -
Stsc211673g00014 743 CDD RecA-like_NSF-SEC18_r1-like 219 395 - -
Stsc211673g00014 743 Gene3D - 205 398 IPR027417 -
Stsc211673g00014 743 PANTHER VESICULAR-FUSION PROTEIN NSF 12 742 IPR039812 GO:0016887|GO:0035494
Stsc211673g00014 743 SUPERFAMILY Cdc48 domain 2-like 98 201 IPR029067 -
Stsc211673g00014 743 FunFam Vesicle-fusing ATPase 398 485 - -
Stsc211673g00014 743 Gene3D - 8 95 - -
Stsc211673g00014 743 Gene3D - 399 490 - -
Stsc211673g00014 743 FunFam Vesicle-fusing ATPase 99 196 - -
Stsc211673g00014 743 Pfam AAA+ lid domain 423 478 IPR041569 -
Stsc211673g00014 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 495 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211673g00014 Stsc-Chr211673 40296 47972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211673g00014 247 463 Calmodulin-binding Proteins AT3G56690 39.819 9.99e-41 159