Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211673g00013 ATGGCTGAAAATTATAGTAATGGTGGTGGCCAAGTAGGGCAATCGCTGAGGCCACGGTGTCCGGCGCCTTTTCTTTTGAAGACTTATGATTTATTGGAAGAAGGCGGGGTGGCGGATGGCAGCGGCGGCAAGATAGTTTCATGGAATGGAGATGGGAGTGGTTTTATTGTGTGGTCTCCGGCTGAATTCTCTGACCTCACTTTGCCTAGATATTTCAAGCACAATAACTTCTCTAGCTTCATTCGCCAATTGAATACCTATGGATTTAAGAAAATATCATCAAAAAGATGGGAGTTCAAGCATGAGAAATTTCAGAGAGGATGTAGGGACATGCTAGTTGAGATCACAAGAAAAAAGGGCGAGCCTAGCGTGTTCCCTTCATACCTCAAGTCATCTTCAGAGGAAAATGCAACCACTTCTAATTCAATGGAAGAAAACAACAATAATAGCCATCAACTACTCATGGAGGAGAACAAGAACCTTAAGAAGGAGAGGTTGGAGCTGCAAATGCAGATAGCTGAGTTTAAATCACTTGAAATGAAGTTGTTAGAGTGTCTCTCTCAAGTTATGGACAACCACCAAAATAAAAGTAGGAGACAATGTTAG 606 0.4224 MAENYSNGGGQVGQSLRPRCPAPFLLKTYDLLEEGGVADGSGGKIVSWNGDGSGFIVWSPAEFSDLTLPRYFKHNNFSSFIRQLNTYGFKKISSKRWEFKHEKFQRGCRDMLVEITRKKGEPSVFPSYLKSSSEENATTSNSMEENNNNSHQLLMEENKNLKKERLELQMQIAEFKSLEMKLLECLSQVMDNHQNKSRRQC 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211673g00013 201 ProSitePatterns HSF-type DNA-binding domain signature. 68 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc211673g00013 201 Coils Coil 144 178 - -
Stsc211673g00013 201 SMART hsfneu3 20 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc211673g00013 201 Pfam HSF-type DNA-binding 24 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc211673g00013 201 SUPERFAMILY "Winged helix" DNA-binding domain 21 118 IPR036390 -
Stsc211673g00013 201 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc211673g00013 201 PRINTS Heat shock factor (HSF) domain signature 80 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc211673g00013 201 FunFam Heat stress transcription factor A-6b 17 119 - -
Stsc211673g00013 201 Gene3D - 18 119 IPR036388 -
Stsc211673g00013 201 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 191 IPR027725 -
Stsc211673g00013 201 MobiDBLite consensus disorder prediction 126 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211673g00013 Stsc-Chr211673 34889 37197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211673g00013 20 178 HSF AT5G62020 41.081 1.83e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc211673g00013 HSF_DNA-bind 1.3e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211673g00013 K09419 - gmx:100783723 284.263