Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc211673g00013 | ATGGCTGAAAATTATAGTAATGGTGGTGGCCAAGTAGGGCAATCGCTGAGGCCACGGTGTCCGGCGCCTTTTCTTTTGAAGACTTATGATTTATTGGAAGAAGGCGGGGTGGCGGATGGCAGCGGCGGCAAGATAGTTTCATGGAATGGAGATGGGAGTGGTTTTATTGTGTGGTCTCCGGCTGAATTCTCTGACCTCACTTTGCCTAGATATTTCAAGCACAATAACTTCTCTAGCTTCATTCGCCAATTGAATACCTATGGATTTAAGAAAATATCATCAAAAAGATGGGAGTTCAAGCATGAGAAATTTCAGAGAGGATGTAGGGACATGCTAGTTGAGATCACAAGAAAAAAGGGCGAGCCTAGCGTGTTCCCTTCATACCTCAAGTCATCTTCAGAGGAAAATGCAACCACTTCTAATTCAATGGAAGAAAACAACAATAATAGCCATCAACTACTCATGGAGGAGAACAAGAACCTTAAGAAGGAGAGGTTGGAGCTGCAAATGCAGATAGCTGAGTTTAAATCACTTGAAATGAAGTTGTTAGAGTGTCTCTCTCAAGTTATGGACAACCACCAAAATAAAAGTAGGAGACAATGTTAG | 606 | 0.4224 | MAENYSNGGGQVGQSLRPRCPAPFLLKTYDLLEEGGVADGSGGKIVSWNGDGSGFIVWSPAEFSDLTLPRYFKHNNFSSFIRQLNTYGFKKISSKRWEFKHEKFQRGCRDMLVEITRKKGEPSVFPSYLKSSSEENATTSNSMEENNNNSHQLLMEENKNLKKERLELQMQIAEFKSLEMKLLECLSQVMDNHQNKSRRQC | 201 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc211673g00013 | 201 | ProSitePatterns | HSF-type DNA-binding domain signature. | 68 | 92 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Stsc211673g00013 | 201 | Coils | Coil | 144 | 178 | - | - | |
Stsc211673g00013 | 201 | SMART | hsfneu3 | 20 | 118 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Stsc211673g00013 | 201 | Pfam | HSF-type DNA-binding | 24 | 118 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Stsc211673g00013 | 201 | SUPERFAMILY | "Winged helix" DNA-binding domain | 21 | 118 | IPR036390 | - | |
Stsc211673g00013 | 201 | PRINTS | Heat shock factor (HSF) domain signature | 67 | 79 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Stsc211673g00013 | 201 | PRINTS | Heat shock factor (HSF) domain signature | 80 | 92 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Stsc211673g00013 | 201 | FunFam | Heat stress transcription factor A-6b | 17 | 119 | - | - | |
Stsc211673g00013 | 201 | Gene3D | - | 18 | 119 | IPR036388 | - | |
Stsc211673g00013 | 201 | PANTHER | HEAT SHOCK TRANSCRIPTION FACTOR | 17 | 191 | IPR027725 | - | |
Stsc211673g00013 | 201 | MobiDBLite | consensus disorder prediction | 126 | 149 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc211673g00013 | Stsc-Chr211673 | 34889 | 37197 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc211673g00013 | 20 | 178 | HSF | AT5G62020 | 41.081 | 1.83e-41 | 140 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HSF | Stsc211673g00013 | HSF_DNA-bind | 1.3e-28 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc211673g00013 | K09419 | - | gmx:100783723 | 284.263 |