Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211667g00016 ATGGGAAGAAGTCCATGCTGTGACAAAGCTAACGTGAAAAGAGGGCCATGGTCTCATGAAGAAGATCAAATTCTCAAAACATACCTCAACAACCATGGCACTCCTGCTAATTGGATTGCTCTTCCTGGCAAAGCAGGTCTCAAGCGCTGCGGCAAAAGCTGTCGTCTCAGATGGCTCAATTATCTCAGGCCTCACATCAACCATGGAGCTTTCACCAACCATGAAGACAACCTTATCTCCACCCTTTATGCTACCATCGGAAGCAGGTGGTCCCTTATAGCAGCTCAACTACCTGGAAGAACTGATAATGATGTCAAAAACCACTGGAACACTAAGCTTAAGAAAAAGTTCTTGGCAGAAGGAATCAACACCAATAATAATGCCACTTCCCTCAACACTGCTTCTTCAAAGTTCCCAACTTTCACTGCTCCTCAAGTTGAAAACTTTGATCATATTAACAACTCAACTACTACTTGTTTTGAGTCTGGTGGTGTTTTGGGTTTGCACCAAACACCACCATTCCCAGTTCCATCAAAGATGCTACCTTTGGAATCTGACGTTTCAGCTGCTAATTCCTTGGTGATAAAGGAGAAAGATCATGATGGTCATCCCTGGCTTGGTTATTATTATGCTGAAGAAGATGAGGCGTTCTTGCTTGATTTTGTGCAAAATGGATTTGCTTAG 684 0.4313 MGRSPCCDKANVKRGPWSHEEDQILKTYLNNHGTPANWIALPGKAGLKRCGKSCRLRWLNYLRPHINHGAFTNHEDNLISTLYATIGSRWSLIAAQLPGRTDNDVKNHWNTKLKKKFLAEGINTNNNATSLNTASSKFPTFTAPQVENFDHINNSTTTCFESGGVLGLHQTPPFPVPSKMLPLESDVSAANSLVIKEKDHDGHPWLGYYYAEEDEAFLLDFVQNGFA 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211667g00016 227 Gene3D - 69 139 - -
Stsc211667g00016 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Stsc211667g00016 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Stsc211667g00016 227 Gene3D - 7 68 - -
Stsc211667g00016 227 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc211667g00016 227 PANTHER OS09G0431300 PROTEIN 1 140 - -
Stsc211667g00016 227 SMART sant 67 115 IPR001005 -
Stsc211667g00016 227 SMART sant 13 64 IPR001005 -
Stsc211667g00016 227 CDD SANT 16 62 IPR001005 -
Stsc211667g00016 227 FunFam Transcription factor RAX3 7 68 - -
Stsc211667g00016 227 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Stsc211667g00016 227 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Stsc211667g00016 227 CDD SANT 70 113 IPR001005 -
Stsc211667g00016 227 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Stsc211667g00016 227 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211667g00016 Stsc-Chr211667 70404 71168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211667g00016 1 118 MYB Transcription Factor Family AT5G65790 75.424 8.51e-65 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc211667g00016 Myb_DNA-binding 9.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211667g00016 K09422 - gmx:778160 236.884