Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211667g00002 ATGAGCATCAAAAAGGGGCGTTATGAAGAAGAAGATGACATGGTGCTGAGTGGTGGTTCTTCCTCTTCCTCCTCCTCCTGCTCAGATGGGAGTGGCAAAGTGGTGGTTGTTGCAGTTAGAGCTTCAAGAGATATTTCAAGAACTGCTTTGGTTTGGGCATTGACTCATGTTGTTCAACCTGGGGATTCCATTAAGCTCTTAGTTCTCATTCCTCTTCTCTCCTCTTCCAAGAGGAATTGGGGATTCTCAAGATTCACCACTGATTGTACCACTAGTAACTGGAGATCTCACTTAGGAACTGCTTCAGATCAGAGAGAAATTATCACAAGTTCATGTTCTCAATTGGTGCTTCAACTCCATGATTTATATGATCCAGAGAAGATTAAGATCAGAGTTAAGATTCTGTCTAGTTCTTTATGTGGAGCAGTTGCCATTGAAGCCAAGAGAGTCCACTCAAGCTGGGTTATATTGGACAAAAAATTGAAACAAGAAAAGAAATGCTGCATGGAGCAGCTGCATTGCAATATAGTAAGCATGAAGAGATCAAGGGCAAAGATTCTACGCTTGAATTTGAACAGTTCACCAAAGATGGAACTCAATGATGGGGGATTGGAGCTGAATGGAATGAATGCATATGCAAAACAAAATCCAGACACAATTAGAGGTCCTGCTGTTACTCCTGCTAGTAGTCCTGAGCAAGGATCACCACTATTGACTGCAACTGATATTGGAACCTCATCACTCTCAAGCTCAGATCCTAGCTCTTCACCATTTTTCCACTATGAAAGACGAAGGCGGGGTTTTCCTTTTGTTCATGAGGGGCTGAAAAATCTGGAGGATATTGAATCTGACTCAGAGAGTGAAAAGCTAAGTTTATCTTCAAAAAGTTCATATTTTCAGCCCTGGATTGCCAATGTCATTTGTATTGATGGGGAGGACAGTATGCAAAGATTCAGTGATAAGGAGTTGGTTTGTGGCTATGAATCTGTGCTTCAGAAACTCTCTAAGTTCGATCAAGAGCCTGTCTTAGGAGTGCTTAATTGCAAGAATGATGTGAACCTAAGCAAAAGTGTTAGAGAGGCAGTTTCGCTTTCGAGAAATGCACCTCCTGGTCCTCCTCCATTGTGCTCTATTTGTCAGCACAAGGCACCTGCATTTGGAAACCCTCCAAGGTGGTTTACATTTGCTGAATTGAAAGTTGCCACAAATGGTTTTTCACAAGCAAATTTCTTGGCAGAAGGTGGTTTTGGGTCCGTGCACCGCGGCGTGCTACCTGATGGACAAGTCATTGCTGTGAAGCAGTATAAAGTAGCCAGTTCACAAGGTGATAAAGAGTTTTGCTCAGAAGTTGAAGTGTTAAGCTGCGCACAACACCGGAATGTTGTGATGCTAATTGGGTTTTGTGTGGAGGATGGAAGAAGATTACTTGTTTATGAATACATATGCAATGGCTCTTTGGATTCTCATCTTTATGGACGAAAAGAGAAGGTACTAGAATGGTGTGCACGGCAAAAGATTGCAGTAGGAGCTGCTCGAGGTTTAAGGTACCTGCATGAAGAATGCAGAGTGGGGTGTATTGTGCACCGTGATATGAGACCTAACAATATCCTCCTTACCCATGATTTTGAAGCACAGGTGGGAGATTTTGGACTTGCTAGGTGGCAACCTGATGGAGATTTGGGTGTGGAAACCAGGGTCATAGGAACATTTGGGTATTTGGCTCCAGAATATGCTCAAAGTGGGCAAATTACTGAGAAAGCTGATGTTTATTCGTTTGGAATAGTGTTATTGGAGCTTGTCACAGGAAGGAAAGCTATTGATATAAACCGCCCCAGAGGGCAGCAATGCCTCAGTGAATGGGCACGGCCATTGCTTGAAGAAGAAGAAATGAGAGAAGAGCTGGTTGATCCGAGCATAAGGAAGGGTTATTTTCATATTCATAAAGAGGTTAATAGAATGTTGCAATGTTGCTCAATGTGCATCCGAAGAGACCCTCATTCAAGGCCCAGAATGTCTCAGGTCCTAAGGATGTTGGAAGCTGATATTCTCATCTGA 2055 0.4292 MSIKKGRYEEEDDMVLSGGSSSSSSSCSDGSGKVVVVAVRASRDISRTALVWALTHVVQPGDSIKLLVLIPLLSSSKRNWGFSRFTTDCTTSNWRSHLGTASDQREIITSSCSQLVLQLHDLYDPEKIKIRVKILSSSLCGAVAIEAKRVHSSWVILDKKLKQEKKCCMEQLHCNIVSMKRSRAKILRLNLNSSPKMELNDGGLELNGMNAYAKQNPDTIRGPAVTPASSPEQGSPLLTATDIGTSSLSSSDPSSSPFFHYERRRRGFPFVHEGLKNLEDIESDSESEKLSLSSKSSYFQPWIANVICIDGEDSMQRFSDKELVCGYESVLQKLSKFDQEPVLGVLNCKNDVNLSKSVREAVSLSRNAPPGPPPLCSICQHKAPAFGNPPRWFTFAELKVATNGFSQANFLAEGGFGSVHRGVLPDGQVIAVKQYKVASSQGDKEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRKEKVLEWCARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILLTHDFEAQVGDFGLARWQPDGDLGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGIVLLELVTGRKAIDINRPRGQQCLSEWARPLLEEEEMREELVDPSIRKGYFHIHKEVNRMLQCCSMCIRRDPHSRPRMSQVLRMLEADILI 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211667g00002 684 ProSitePatterns Tyrosine protein kinases specific active-site signature. 526 538 IPR008266 GO:0004672|GO:0006468
Stsc211667g00002 684 MobiDBLite consensus disorder prediction 222 256 - -
Stsc211667g00002 684 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 377 480 - -
Stsc211667g00002 684 Pfam Protein tyrosine and serine/threonine kinase 409 678 IPR001245 GO:0004672|GO:0006468
Stsc211667g00002 684 ProSiteProfiles Protein kinase domain profile. 405 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211667g00002 684 SUPERFAMILY Protein kinase-like (PK-like) 386 679 IPR011009 -
Stsc211667g00002 684 PANTHER OS01G0750732 PROTEIN 354 682 - -
Stsc211667g00002 684 Gene3D Transferase(Phosphotransferase) domain 1 481 682 - -
Stsc211667g00002 684 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Stsc211667g00002 684 MobiDBLite consensus disorder prediction 217 256 - -
Stsc211667g00002 684 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 481 684 - -
Stsc211667g00002 684 Gene3D Phosphorylase Kinase; domain 1 377 480 - -
Stsc211667g00002 684 CDD STKc_IRAK 411 679 - -
Stsc211667g00002 684 MobiDBLite consensus disorder prediction 16 30 - -
Stsc211667g00002 684 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211667g00002 Stsc-Chr211667 6003 8878 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211667g00002 364 674 Trihelix Transcription Factor Family AT1G68690 50.318 2.73e-101 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Stsc211667g00002 PK_Tyr_Ser-Thr 2.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211667g00002 - - aprc:113855006 1075.85